YRC Public Data Repository - Protein Structure Prediction

Protein:	YGL082W
Organism:	Saccharomyces cerevisiae
Length:	381 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL082W.

Description	E-value	Query Range	Subject Range
YGL082W - Putative protein of unknown function; predicted prenylation/proteolysis target of Afc1p and Rce1p; g... gi\|151943725 - gi\|151943725\|gb\|EDN62035.1\| conserved protein [Saccharomyces cerevisiae YJM789] YGI2_YEAST - Uncharacterized protein YGL082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL082W ...	0.0	[1..381]	[1..381]
gi\|6330169 - gi\|6330169\|dbj\|BAA86478.1\| KIAA1164 protein [Homo sapiens]	0.0	[5..328]	[13..328]
gi\|54291056, gi\|... - gi\|54291056\|dbj\|BAD61733.1\| NF-E2 inducible protein-like [Oryza sativa Japonica Group], gi\|54290682\|...	2.0E-87	[7..293]	[173..452]
CE25491 - status:Confirmed UniProt:Q9N370 protein_id:AAF60801.1	2.0E-79	[5..284]	[53..320]
YAGB_SCHPO - Uncharacterized protein C12G12.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G... SPAC12G12.11c - DUF544 family protein	3.0E-75	[4..264]	[29..299]
gi\|18413696, gi\|... - gi\|21553726\|gb\|AAM62819.1\| unknown [Arabidopsis thaliana], gi\|18413696\|ref\|NP_567383.1\| unknown prot...	2.0E-48	[175..323]	[482..624]

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Predicted Domain #1

Region A:
Residues: [1-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVTFLTKNV QINGTQFKIL LQNGQGECAL IALANVLLIS PAHARYAQEI SRLVRGKETV  60
   61 TLNELVQTLA DMGVQNPNGT DVDKQQLLQI LPQLYSGLNI NPEFNGSFED GVEMSIFRLY 120
  121 NVGIVHGWII DGDNDPNSYE HVSKYSYMGA QKVLVQSYEI QKNNAQFENS EQIQSDAPYL 180
  181 KSFLARSATQ LTEYGLTHLR EILVERSYAV LFRNDHFCTL YKNNGELFTL VTDPTYRNRK 240
  241 DINWQSLKSV NGSQDSYYTG NFIPTSLERT ETTATGQNES YISNPFS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [288-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQNTGHVTSN QVNSGASGVQ QIEDDEELAR RLQEQEDMRA ANNMQNGYAN NGRNHQRERF  60
   61 ERPEKNSKKN KFLPFNGSNK EKKRDKLKKN CVIM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [277-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNESYISNPF SDQNTGHVTS NQVNSGASGV QQIEDDEELA RRLQEQEDMR AANNMQNGYA  60
   61 NNGRNHQRER FERPEKNSKK NKFLPFNGSN KEKKRDKLKK NCVIM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits