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View Structure Prediction Details

Protein: RPL30
Organism: Saccharomyces cerevisiae
Length: 105 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL30.

Description E-value Query
Range
Subject
Range
rpl-30 - status:Partially_confirmed UniProt:Q9XWS4 protein_id:CAA21573.1
2.0E-31 [2..103] [6..107]
RL30_ICTPU - 60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2
5.0E-31 [2..104] [6..108]
RL30_MOUSE - 60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=1 SV=2
gi|194037009, gi... - gi|194037009|ref|XP_001929027.1| PREDICTED: similar to ribosomal protein L30 isoform 1 [Sus scrofa],...
gi|187609332 - gi|187609332|pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Comple...
gi|109087033, gi... - gi|109087035|ref|XP_001094073.1| PREDICTED: similar to ribosomal protein L30 isoform 3 [Macaca mulat...
RL30_RAT - 60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2
ENSCJAT00000030258 - null
RPL30 - ribosomal protein L30
RL30_MACFA - 60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3
RL30_BOVIN - 60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3
gi|114621048, gi... - gi|55631002|ref|XP_519874.1| PREDICTED: similar to ribosomal protein L30 isoform 10 [Pan troglodytes...
gi|61359038 - gi|61359038|gb|AAX41659.1| ribosomal protein L30 [synthetic construct]
gi|149721564 - gi|149721564|ref|XP_001491200.1| PREDICTED: similar to ribosomal protein L30 [Equus caballus]
1.0E-30 [2..104] [6..108]
RL30_MAIZE - 60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1
3.0E-30 [2..103] [6..107]
RL30_LUPLU - 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
6.0E-30 [2..104] [6..108]
RL30_ORYSA - 60S ribosomal protein L30 - Oryza sativa (Rice)
gi|218187969 - gi|218187969|gb|EEC70396.1| hypothetical protein OsI_01372 [Oryza sativa Indica Group]
RL30_ORYSJ - 60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1
6.0E-30 [2..103] [6..107]
RL30_BRABE - 60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1
gi|28200299 - gi|28200299|gb|AAO31781.1| ribosomal protein L30 [Branchiostoma belcheri tsingtaunese]
9.0E-30 [4..104] [5..105]
RL30_EUPES - 60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1
2.0E-29 [2..104] [6..108]
RL302_ARATH - 60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1
7.0E-29 [2..104] [6..108]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVKSQESI NQKLALVIKS GKYTLGYKST VKSLRQGKSK LIIIAANTPV LRKSELEYYA  60
   61 MLSKTKVYYF QGGNNELGTA VGKLFRVGVV SILEAGDSDI LTTLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 479.165202
Match: 1ck2A_
Description: Eukaryotic ribosomal protein L30 (L30e)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 7.52323416912124 bayes_pls_golite062009
structural molecule activity 6.97581143389173 bayes_pls_golite062009
RNA binding 5.39762744650785 bayes_pls_golite062009
pre-mRNA 5'-splice site binding 5.13266824583271 bayes_pls_golite062009
3.80269215693277 bayes_pls_golite062009
nucleic acid binding 2.83245292332884 bayes_pls_golite062009
mRNA binding 2.62944559104613 bayes_pls_golite062009
snoRNA binding 2.44542325037279 bayes_pls_golite062009
binding 1.91254208399282 bayes_pls_golite062009
protein binding 0.381324299701367 bayes_pls_golite062009
catalytic activity 0.264002643439785 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle