Protein: | PIB2 |
Organism: | Saccharomyces cerevisiae |
Length: | 635 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIB2.
Description | E-value | Query Range |
Subject Range |
|
359.0 | [0..1] | [635..1] |
|
275.0 | [0..11] | [598..177] |
|
262.0 | [0..11] | [598..279] |
|
215.0 | [0..5] | [598..270] |
Region A: Residues: [1-364] |
1 11 21 31 41 51 | | | | | | 1 MTALHSVSKT PAIKEEEEDG DERDGRGVPL GPRNHDYRGR KGDEESGADT VTSPITFEKK 60 61 KIAPRASTHS EQSILSSISL KSMVNQHRQQ QLQQESSTGA GTGFVDRKQQ IQSPAMVSIL 120 121 RKNSAEENVR SSHSSKLGEG QIDGRKASAS KEIGKTLPFT DDQRSNPELD PTNSVVDVSR 180 181 GKNTKSKTVF NELEDDADDD DEVRQKNLTT QALRKLSSFK MNASSNLRLS KENKAKESSS 240 241 SSTSSVSSSS TSKVENIVDK LTTTNSSSMS QLRFGNTNVI IDSVNHAAKP PHQQMLRKPS 300 301 LEFLPQPASS TNLNFNSNKH KSNVRQISNP KKPLYIPAVL RKVSETNITN DDLLNATLSS 360 361 YYKK |
Detection Method: | |
Confidence: | 13.69897 |
Match: | 1i84S |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [365-446] |
1 11 21 31 41 51 | | | | | | 1 ASNLEHGFNP SKSQSASVQN ANNLRIISSQ SSVQSNTSSI LESYKNKISS YLFPNSIPNS 60 61 DRINLIPTIS NRNSARVNPP TK |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.590 | d.58.1 | 4Fe-4S ferredoxins |
View | Download | 0.590 | d.58.1 | 4Fe-4S ferredoxins |
View | Download | 0.571 | b.36.1 | PDZ domain-like |
View | Download | 0.555 | b.36.1 | PDZ domain-like |
View | Download | 0.514 | a.118.1 | ARM repeat |
View | Download | 0.511 | d.110.7 | Description not found. |
View | Download | 0.470 | d.58.11 | EF-G/eEF-2 domains III and V |
View | Download | 0.427 | a.109.1 | Class II MHC-associated invariant chain ectoplasmic trimerization domain |
View | Download | 0.416 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
Region A: Residues: [447-575] |
1 11 21 31 41 51 | | | | | | 1 DHWIPDSKRN SCRYCHKPFT LWERKHHCRH CGDIFCQDHL RHWLYLDSQA NFIMINELNN 60 61 GGINGGGTLC KICDDCLVEY ENLSTTNHNA NTNEDNINVE EGEDDDNDNR KKLRNYYKNR 120 121 QMNALFRPK |
Detection Method: | |
Confidence: | 93.751666 |
Match: | 1vfyA |
Description: | vps27p protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [576-635] |
1 11 21 31 41 51 | | | | | | 1 KGGSSQEHAT VDRDTTTPIQ VKSNDEEADN ENTGGEQEEG NDVLGSVIGS VPANWNWSSF 60 61 |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.660 | a.4.1 | Homeodomain-like |
View | Download | 0.660 | a.4.1 | Homeodomain-like |
View | Download | 0.636 | a.4.1 | Homeodomain-like |
View | Download | 0.580 | a.4.1 | Homeodomain-like |
View | Download | 0.556 | a.4.1 | Homeodomain-like |
View | Download | 0.556 | a.4.1 | Homeodomain-like |
View | Download | 0.529 | a.4.1 | Homeodomain-like |
View | Download | 0.523 | a.4.8 | Ribosomal protein S18 |