| Protein: | PUF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 888 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUF4.
| Description | E-value | Query Range |
Subject Range |
|
|
661.0 | [0..1] | [888..1] |
|
|
543.0 | [0..71] | [884..103] |
|
|
496.0 | [0..3] | [884..174] |
|
|
494.0 | [0..3] | [884..175] |
|
|
494.0 | [0..3] | [884..175] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MSTKGLKEEI DDVPSVDPVV SETVNSALEQ LQLDDPEENA TSNAFANKVS QDSQFANGPP 60
61 SQMFPHPQMM GGMGFMPYSQ MMQVPHNPC
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.694 | a.74.1 | Cyclin-like |
| View | Download | 0.694 | a.74.1 | Cyclin-like |
| View | Download | 0.678 | a.74.1 | Cyclin-like |
| View | Download | 0.678 | a.74.1 | Cyclin-like |
| View | Download | 0.655 | a.74.1 | Cyclin-like |
| View | Download | 0.655 | a.74.1 | Cyclin-like |
| View | Download | 0.568 | d.94.1 | HPr-like |
| View | Download | 0.560 | a.74.1 | Cyclin-like |
| View | Download | 0.560 | a.74.1 | Cyclin-like |
|
Region A: Residues: [90-216] |
1 11 21 31 41 51
| | | | | |
1 PFFPPPDFND PTAPLSSSPL NAGGPPMLFK NDSLPFQMLS SGAAVATQGG QNLNPLINDN 60
61 SMKVLPIASA DPLWTHSNVP GSASVAIEET TATLQESLPS KGRESNNKAS SFRRQTFHAL 120
121 SPTDLIN
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [217-446] |
1 11 21 31 41 51
| | | | | |
1 AANNVTLSKD FQSDMQNFSK AKKPSVGANN TAKTRTQSIS FDNTPSSTSF IPPTNSVSEK 60
61 LSDFKIETSK EDLINKTAPA KKESPTTYGA AYPYGGPLLQ PNPIMPGHPH NISSPIYGIR 120
121 SPFPNSYEMG AQFQPFSPIL NPTSHSLNAN SPIPLTQSPI HLAPVLNPSS NSVAFSDMKN 180
181 DGGKPTTDND KAGPNVRMDL INPNLGPSMQ PFHILPPQQN TPPPPWLYST
|
| Detection Method: | |
| Confidence: | 11.96 |
| Match: | |
| Description: | No description for 1deqA was found. |
|
Region A: Residues: [447-521] |
1 11 21 31 41 51
| | | | | |
1 PPPFNAMVPP HLLAQNHMPL MNSANNKHHG RNNNSMSSHN DNDNIGNSNY NNKDTGRSNV 60
61 GKMKNMKNSY HGYYN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.338 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.334 | a.28.1 | ACP-like |
| View | Download | 0.307 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.307 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.299 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.296 | d.50.3 | PI-Pfui intein middle domain |
|
Region A: Residues: [522-673] |
1 11 21 31 41 51
| | | | | |
1 NNNNNNNNNN NNNNSNATNS NSAEKQRKIE ESSRFADAVL DQYIGSIHSL CKDQHGCRFL 60
61 QKQLDILGSK AADAIFEETK DYTVELMTDS FGNYLIQKLL EEVTTEQRIV LTKISSPHFV 120
121 EISLNPHGTR ALQKLIECIK TDEEAQIVVD SL
|
| Detection Method: | |
| Confidence: | 624.228787 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [674-776] |
1 11 21 31 41 51
| | | | | |
1 RPYTVQLSKD LNGNHVIQKC LQRLKPENFQ FIFDAISDSC IDIATHRHGC CVLQRCLDHG 60
61 TTEQCDNLCD KLLALVDKLT LDPFGNYVVQ YIITKEAEKN KYD
|
| Detection Method: | |
| Confidence: | 624.228787 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [777-888] |
1 11 21 31 41 51
| | | | | |
1 YTHKIVHLLK PRAIELSIHK FGSNVIEKIL KTAIVSEPMI LEILNNGGET GIQSLLNDSY 60
61 GNYVLQTALD ISHKQNDYLY KRLSEIVAPL LVGPIRNTPH GKRIIGMLHL DS
|
| Detection Method: | |
| Confidence: | 624.228787 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
