YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PMA1
Organism: Saccharomyces cerevisiae
Length: 918 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMA1.

Description E-value Query
Range
Subject
Range
AT1A3_CHICK - Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1
0.0 [31..886] [3..955]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1
0.0 [1..886] [1..966]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [2..886] [20..1004]
PMA1_YEAST - Plasma membrane ATPase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMA1 PE=1 SV=2
PMA1 - Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plas...
0.0 [1..918] [1..918]
gi|11067034 - gi|11067034|gb|AAG27060.1| Na+/K+ ATPase alpha subunit isoform 8 [Danio rerio]
0.0 [3..886] [8..969]
gi|1364218 - gi|1364218|emb|CAA26582.1| unnamed protein product [Ovis aries]
0.0 [3..886] [3..961]
gi|148692351, gi... - gi|21450321|ref|NP_659170.1| Na+/K+ -ATPase alpha 3 subunit [Mus musculus], gi|18044918|gb|AAH20177....
0.0 [24..886] [3..958]

Back

Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTSSSSSS SSASSVSAHQ PTQEKPAKTY DDAASESSDD DDIDALIEEL QSNHGVDDED  60
   61 SDNDGPVAAG EARPVPEEYL QTDPSYGLTS DEVLKRRKKY GLNQMAD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [178-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTAVVIRDGQ LVEIPANEVV PGDILQLEDG TVIPTDGRIV TEDCFLQIDQ SAITGESLAV  60
   61 DKHYGDQTFS SSTVKRGEGF MVVTATGDNT FVGRAAALVN KAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1306.9897
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #2
Region A:
Residues: [108-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKESLVVKFV MFFVGPIQFV MEAAAILAAG LSDWVDFGVI CGLLMLNAGV GFVQEFQAGS  60
   61 

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [281-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGQGHFTEVL NGIGIILLVL VIATLLLVWT ACFYRTNGIV RILRYTLGIT IIGVPVGLPA  60
   61 VVTTT

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [684-918]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFHRMYSYVV YRIALSLHLE IFLGLWIAIL DNSLDIDLIV FIAIFADVAT LAIAYDNAPY  60
   61 SPKPVKWNLP RLWGMSIILG IVLAIGSWIT LTTMFLPKGG IIQNFGAMNG IMFLQISLTE 120
  121 NWLIFITRAA GPFWSSIPSW QLAGAVFAVD IIATMFTLFG WWSENWTDIV TVVRVWIWSI 180
  181 GIFCVLGGFY YEMSTSEAFD RLMNGKPMKE KKSTRSVEDF MAAMQRVSTQ HEKET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1306.9897
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #3
Region A:
Residues: [168-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVDELKKTLA 

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [346-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGAAYLAK KQAIVQKLSA IESLAGVEIL CSDKTGTLTK 

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [536-683]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRDDTAQTVS EARHLGLRVK MLTGDAVGIA KETCRQLGLG TNIYNAERLG LGGGGDMPGS  60
   61 ELADFVENAD GFAEVFPQHK YRVVEILQNR GYLVAMTGDG VNDAPSLKKA DTGIAVEGAT 120
  121 DAARSAADIV FLAPGLSAII DALKTSRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1306.9897
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #4
Region A:
Residues: [386-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKLSLHEPYT VEGVSPDDLM LTACLAASRK KKGLDAIDKA FLKSLKQYPK AKDALTKYKV  60
   61 LEFHPFDPVS KKVTAVVESP EGERIVCVKG APLFVLKTVE EDHPIPEDVH ENYENKVAEL 120
  121 ASRGFRALGV ARKRGEGHWE ILGVMPCMDP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1306.9897
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle