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View Structure Prediction Details

Protein: ERP6
Organism: Saccharomyces cerevisiae
Length: 216 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERP6.

Description E-value Query
Range
Subject
Range
gi|996057 - gi|996057|emb|CAA62380.1| gp25l2 [Homo sapiens]
5.0E-58 [7..216] [4..214]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1
2.0E-57 [7..216] [17..227]
CE24533 - status:Confirmed UniProt:Q9U1Z4 protein_id:CAB60397.1
1.0E-56 [6..216] [3..211]
TMEDA_MESAU - Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1
1.0E-55 [6..216] [18..218]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1
1.0E-55 [6..216] [18..218]
TMEDA_RAT - Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2
5.0E-55 [6..216] [2..202]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSHYIFLAF VLLPFRVSAF YFYGYGGDRK CFLKELSKDT LLKGSYNLEV YDDKLADYAL  60
   61 PSYNDYGIVI DVEEVFDNNH RVVHQQGSPS GDFSFLALES GEYKICLQSR VNNWVGKTKT 120
  121 KLEIEFEVGF EAMLDMQRKE TLESLHGKVS ILNSKIVDIR REQQLMRERE ESFRDISESV 180
  181 NSRAMWWTVT QVTLLIIICV WQMKSLRSFF VKQKVL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 98.21467
Match: PF01105
Description: emp24/gp25L/p24 family/GOLD

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [142-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESLHGKVSI LNSKIVDIRR EQQLMREREE SFRDISESVN SRAMWWTVTQ VTLLIIICVW  60
   61 QMKSLRSFFV KQKVL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle