| Protein: | RMD8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 662 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD8.
| Description | E-value | Query Range |
Subject Range |
|
|
545.0 | [0..20] | [662..24] |
|
|
522.0 | [0..13] | [653..20] |
|
|
516.0 | [0..1] | [658..1] |
|
|
465.0 | [0..307] | [651..109] |
|
|
460.0 | [0..307] | [651..109] |
|
|
458.0 | [0..307] | [651..109] |
|
|
458.0 | [0..307] | [651..110] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MSYKANQPSP GEMPKRSPSI LVTDARTSKN RMSAPFAGHA AGSRKNMENA GVTKSQGVRS 60
61 SAIGPSPLQS FTHPRRRSSG RFSDISIDNI LSDNSDIPSA RREERLSSSS SDRPRQYERL 120
121 SSRR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.316 | c.23.5 | Flavoproteins |
| View | Download | 0.291 | c.23.1 | CheY-like |
|
Region A: Residues: [125-274] |
1 11 21 31 41 51
| | | | | |
1 KMINPLPPRT SKTSQKLVLI PEDDNLNHFQ TLPTNALDRQ RPKVGSMKSN SFDRLPRYSK 60
61 EKSMARITAY NVADGFNLNQ LYKFLQETHE VSPRLYDECL YVAYTLPLLP GKGGFRIKSN 120
121 LSKKTMGGKT LIDNLIDTSE QRDHHYEYYS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.643 | N/A | N/A | d.369.1 | Description not found. |
| View | Download | 0.450 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.417 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.408 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.348 | N/A | N/A | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.329 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.328 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.279 | N/A | N/A | a.118.8 | TPR-like |
|
Region A: Residues: [275-359] |
1 11 21 31 41 51
| | | | | |
1 GVETVEDANN NYELETSGNN NNANQDTTTV PDHLPNPVGQ QDSFNPMEPQ FFAEETPLEI 60
61 EKRERTERIN MLKKEENDSD ASCGN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.318 | g.92.1 | Description not found. |
| View | Download | 0.219 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.208 | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.207 | b.43.3 | Translation proteins |
| View | Download | 0.206 | b.1.1 | Immunoglobulin |
| View | Download | 0.202 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
|
Region A: Residues: [360-662] |
1 11 21 31 41 51
| | | | | |
1 DNNNKNNDKS KLYAVEGNDQ YVQSSRSPAS PSSISTPSPP SSSQNDFDRV YKMHRDNDHE 60
61 GNDRHAEIFI FHYGVIVFWN FTEIQEKNIL GDITFADYKN LMIRPLDEQD IETEQFHFEY 120
121 DRDTERPRIF NDIVTLRSGD HIIELTLSHA IAQSSKLSRF ESRISPILIS VTKLPKRLAL 180
181 YGTLGLKREQ LLKKSGKLFK LRVDVNLSST ILDTPEFFWS FEPSLHPLYV AMREYLEIDQ 240
241 RVQVLNDRCK VFLEFFDICV DSVAERNMAR VTWWFILVIL FGVIFSLTEI FVRYVIIHRH 300
301 TST
|
| Detection Method: | |
| Confidence: | 148.091515 |
| Match: | PF02582 |
| Description: | Uncharacterised ACR, YagE family COG1723 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
