YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL29
Organism:	Saccharomyces cerevisiae
Length:	59 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL29.

Description	E-value	Query Range	Subject Range
gi\|50754217 - gi\|50754217\|ref\|XP_425143.1\| PREDICTED: similar to ribosomal protein L29 [Gallus gallus]	109.0	[0..1]	[46..390]
gi\|114587112 - gi\|114587112\|ref\|XP_001151583.1\| PREDICTED: similar to Ribosomal protein L29 [Pan troglodytes]	103.0	[0..1]	[46..92]
gi\|73985530 - gi\|73985530\|ref\|XP_533805.2\| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface heparin b...	100.0	[0..1]	[46..320]
gi\|94368976, gi\|... - gi\|94368976\|ref\|XP_985224.1\| PREDICTED: similar to 60S ribosomal protein L29 [Mus musculus], gi\|8288...	91.0	[0..1]	[58..21]
gi\|27659232, gi\|... - ref\|XP_226505.1\| similar to 60S RIBOSOMAL PROTEIN L29 (P23) [Rattus norvegicus], gi\|109508890\|ref\|XP...	83.0	[0..1]	[58..1]
gi\|109120513 - gi\|109120513\|ref\|XP_001084708.1\| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface hepar...	83.0	[0..1]	[46..7]
gi\|71005962, gi\|... - gi\|71005962\|ref\|XP_757647.1\| hypothetical protein UM01500.1 [Ustilago maydis 521], ref\|XP_399115.1\| ...	82.0	[0..1]	[58..94]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSKNHTAH NQTRKAHRNG IKKPKTYKYP SLKGVDPKFR RNHKHALHGT AKALAAAKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.215	a.5.6	Hypothetical protein MTH1615

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits