| Protein: | PES4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 611 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PES4.
| Description | E-value | Query Range |
Subject Range |
|
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445.0 | [0..82] | [505..2] |
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445.0 | [0..82] | [505..2] |
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445.0 | [0..82] | [505..2] |
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444.0 | [0..82] | [505..2] |
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Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MYSISNKKPS ILSMVPLNIL KNQDLKVKKD QEKKISFNPV VTPIRPDDYH EKTSRSSSSS 60
61 HSDSPEFLRI NNNKSG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.806 | N/A | N/A | a.20.1 | PGBD-like |
| View | Download | 0.410 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.410 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.405 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.387 | N/A | N/A | b.82.3 | cAMP-binding domain-like |
| View | Download | 0.367 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.351 | N/A | N/A | a.20.1 | PGBD-like |
| View | Download | 0.320 | N/A | N/A | a.28.1 | ACP-like |
|
Region A: Residues: [77-176] |
1 11 21 31 41 51
| | | | | |
1 HKNGKLKSFE SKKLVPLFIG DLHETVTEET LKGIFKKYPS FVSAKVCLDS VTKKSLGHGY 60
61 LNFEDKEEAE KAMEELNYTK VNGKEIRIMP SLRNTTFRKN
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| Detection Method: | |
| Confidence: | 312.927757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [177-273] |
1 11 21 31 41 51
| | | | | |
1 FGTNVFFSNL PLNNPLLTTR VFYDTFSRYG KILSCKLDSR KDIGFVYFED EKTARNVIKM 60
61 YNNTSFFGKK ILCGIHFDKE VRSVPNFETQ KSRLDAE
|
| Detection Method: | |
| Confidence: | 10.221849 |
| Match: | 1fjcA |
| Description: | Nucleolin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [274-377] |
1 11 21 31 41 51
| | | | | |
1 TIIEKEQSLN EKHSKGNDKE SKNIYSSSQN SIFIKNLPTI TTRDDILNFF SEVGPIKSIY 60
61 LSNATKVKYL WAFVTYKNSS DSEKAIKRYN NFYFRGKKLL VTRA
|
| Detection Method: | |
| Confidence: | 38.228787 |
| Match: | 1h6kX |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [378-510] |
1 11 21 31 41 51
| | | | | |
1 QDKEERAKFI ESQKISTLFL ENLSAVCNKE FLKYLCHQEN IRPFKIQIDG YDENSSTYSG 60
61 FIKFRNFEDA TRIFNFLNNR LVGGSIVTTS WERQNNAPKY HDGYGMRNIH TSSHPQITPY 120
121 YQYSHANSLN SPH
|
| Detection Method: | |
| Confidence: | 86.056057 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [511-611] |
1 11 21 31 41 51
| | | | | |
1 MRDLSSMNSS TRSLIKNKNF NKKVLETFEK QVRRGIDFMR FPSATRDENV HGIAEYIFDT 60
61 YWNRDVLILD KFLSLLNSSP YHEGVLQKQI EEAASSLGFK R
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.909 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.907 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.907 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.844 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.829 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.813 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.813 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.808 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.773 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.764 | N/A | N/A | a.118.1 | ARM repeat |
