YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ROG3
Organism: Saccharomyces cerevisiae
Length: 733 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROG3.

Description E-value Query
Range
Subject
Range
ROG3 - Protein that binds the ubiquitin ligase Rsp5p via its 2 PY motifs; has similarity to Rod1p; mutation...
ROG3_YEAST - Protein ROG3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROG3 PE=1 SV=1
0.0 [1..733] [1..733]
YC9F_SCHPO - Arrestin domain-containing protein C584.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...
SPCC584.15c - arrestin /PY protein 2
6.0E-83 [6..684] [6..585]
CE16301 - status:Partially_confirmed UniProt:O17982 protein_id:CAB05787.1
6.0E-77 [23..468] [2..423]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSSGKSTK KKPLLFDIRL KNVDNDVILL KGPPNEAPSV LLSGCIVLSI NEPMQIKSIS  60
   61 LRLYGKIQID VPLERPQDAS SSSLSSSPPK IRKYNKVFYN YAWDNVNLKE YLSGLRGQSG 120
  121 LAGSSSSSNI LG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRQRAQSTSS LKSLKGSSSP SSCTLDKGNY DFPFSAILPG SLPESVESLP NCFVTYSMES  60
   61 VIERSKN

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [277-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENYQYCDPFP PVISENR

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [313-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNGCFVNNPF FQPDHSFQDK WEIDTILQIP NSLSNCVQDC DVRSNIKVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 1jsyA_
Description: Arrestin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [200-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSDLICRKNI RVLRTISPAA VELSETVCVD NSWPDKVDYS ISVPNKAVAI GSATPINISI  60
   61 VPLSKGLKLG SIKVVLF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [294-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVTELNLEDP LNESSGEFN

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [362-444]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKLKFFIILI NPDGHKSELR ASLPIQLFIS PFVALSIKPL SSSNLYSLFS TTNQKDENSS  60
   61 QEEEEEYLFS RSASVTGLEL LAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 1jsyA_
Description: Arrestin
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [445-733]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGGSVPTI SDLMTPPNYE MHVYDRLYSG SFTRTAVETS GTCTPLGSEC STVEDQQQDL  60
   61 EDLRIRLTKI RNQRDNLGLP PSASSAAASR SLSPLLNVPA PEDGTERILP QSALGPNSGS 120
  121 VPGVHSNVSP VLLSRSPAPS VSAHEVLPVP SGLNYPETQN LNKVPSYGKA MKYDIIGEDL 180
  181 PPSYPCAIQN VQPRKPSRVH SRNSSTTLSS SIPTSFHSSS FMSSTASPIS IINGSRSSSS 240
  241 GVSLNTLNEL TSKTSNNPSS NSMKRSPTRR RATSLAGFMG GFLSKGNKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle