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View Structure Prediction Details

Protein: GCN20
Organism: Saccharomyces cerevisiae
Length: 752 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCN20.

Description E-value Query
Range
Subject
Range
GCN20_YEAST - Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN20 PE=1 SV=1
GCN20 - Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate G...
0.0 [1..752] [1..752]
gi|66808447, gi|... - gi|66808447|ref|XP_637946.1| ABC transporter-related protein [Dictyostelium discoideum AX4], gi|6046...
gi|19401856, gi|... - gi|60466383|gb|EAL64440.1| non-transporter ABC protein [Dictyostelium discoideum], gi|19401856|gb|AA...
0.0 [4..738] [10..704]
AB3F_ARATH - ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=1 SV=1
0.0 [146..742] [122..714]
gi|229689190, gi... - gi|229843582|ref|ZP_04463725.1| putative ABC transporter with two ATP-binding domains [Yersinia pest...
gi|229703712, gi... - gi|229894314|ref|ZP_04509497.1| putative ABC transporter with two ATP-binding domains [Yersinia pest...
gi|167050218, gi... - gi|167400269|ref|ZP_02305782.1| ABC transporter, ATP-binding protein [Yersinia pestis biovar Antiqua...
gi|229697836, gi... - gi|229841470|ref|ZP_04461629.1| putative ABC transporter with two ATP-binding domains [Yersinia pest...
gi|229903045, gi... - gi|229903045|ref|ZP_04518161.1| putative ABC transporter with two ATP-binding domains [Yersinia pest...
gi|149290913, gi... - gi|149366539|ref|ZP_01888573.1| ABC transporter ATP-binding protein [Yersinia pestis CA88-4125], gi|...
gi|25384361 - pir||AG0181 ABC transporter ATP-binding protein YPO1491 [imported] - Yersinia pestis (strain CO92)
gi|115347243, gi... - gi|218928632|ref|YP_002346507.1| ABC transporter ATP-binding protein [Yersinia pestis CO92], gi|1612...
0.0 [198..736] [1..524]
gi|110342616, gi... - gi|110641024|ref|YP_668752.1| ABC transporter ATP-binding protein [Escherichia coli 536], gi|1103426...
gi|218369179, gi... - gi|218699193|ref|YP_002406822.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|218694293, gi... - gi|218694293|ref|YP_002401960.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|218688604, gi... - gi|218688604|ref|YP_002396816.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|218557725, gi... - gi|218557725|ref|YP_002390638.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|227884215, gi... - gi|227884215|ref|ZP_04002020.1| ABC superfamily ATP binding cassette transporter, ABC protein [Esche...
gi|251784339, gi... - gi|251784339|ref|YP_002998643.1| hypothetical protein B21_00804 [Escherichia coli BL21], gi|24237661...
gi|238861243, gi... - gi|238900079|ref|YP_002925875.1| fused putative transporter subunits of ABC superfamily: ATP-binding...
gi|254160897, gi... - gi|254160897|ref|YP_003044005.1| fused predicted transporter subunits of ABC superfamily: ATP-bindin...
gi|253325221, gi... - gi|254287711|ref|YP_003053459.1| fused predicted transporter subunits of ABC superfamily: ATP-bindin...
gi|254792016, gi... - gi|254792016|ref|YP_003076853.1| putative ABC transporter with two ATP-binding domains [Escherichia ...
gi|189377736, gi... - gi|189377736|gb|EDU96152.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC50...
gi|168787039, gi... - gi|189373182|gb|EDU91598.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC86...
gi|189003005, gi... - gi|189003005|gb|EDU71991.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC40...
gi|168776359, gi... - gi|187768209|gb|EDU32053.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41...
gi|188487627, gi... - gi|188492428|ref|ZP_02999698.1| ABC transporter, ATP-binding protein [Escherichia coli 53638], gi|18...
gi|170681928, gi... - gi|170681928|ref|YP_001742924.1| ABC transporter, ATP-binding protein [Escherichia coli SMS-3-5], gi...
gi|169888314, gi... - gi|170080479|ref|YP_001729799.1| ABC transporter ATP-binding protein [Escherichia coli str. K-12 sub...
gi|170020824, gi... - gi|170020824|ref|YP_001725778.1| ABC transporter related [Escherichia coli ATCC 8739], gi|169755752|...
gi|168767328, gi... - gi|189363419|gb|EDU81838.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC44...
gi|168763332, gi... - gi|189366538|gb|EDU84954.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC45...
gi|168756612, gi... - gi|189356248|gb|EDU74667.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC44...
gi|168750002, gi... - gi|188015687|gb|EDU53809.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41...
gi|209918068, gi... - gi|209918068|ref|YP_002292152.1| ABC transporter ATP-binding component [Escherichia coli SE11], gi|2...
gi|157065978, gi... - gi|157160298|ref|YP_001457616.1| ABC transporter, ATP-binding protein [Escherichia coli HS], gi|1570...
gi|209398822, gi... - gi|209398822|ref|YP_002269489.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str....
gi|157156320, gi... - gi|157156320|ref|YP_001462015.1| ABC transporter, ATP-binding protein [Escherichia coli E24377A], gi...
gi|208738122, gi... - gi|208822637|ref|ZP_03262956.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ...
gi|208815250, gi... - gi|208815250|ref|ZP_03256429.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ...
gi|218553405, gi... - gi|218553405|ref|YP_002386318.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|218548341, gi... - gi|218548341|ref|YP_002382132.1| putative transporter fused subunits of ABC superfamily: ATP-binding...
gi|217326139, gi... - gi|217326139|ref|ZP_03442223.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ...
gi|215263979, gi... - gi|215485907|ref|YP_002328338.1| fused predicted transporter subunits of ABC superfamily: ATP-bindin...
gi|193069364, gi... - gi|193069364|ref|ZP_03050319.1| ABC transporter, ATP-binding protein [Escherichia coli E110019], gi|...
gi|89107671, gi|... - gi|89107671|ref|AP_001451.1| fused predicted transporter subunits and ATP-binding components of ABC ...
gi|192928947, gi... - gi|193064485|ref|ZP_03045566.1| ABC transporter, ATP-binding protein [Escherichia coli E22], gi|1929...
gi|91209855, gi|... - gi|91209855|ref|YP_539841.1| ABC transporter ATP-binding protein [Escherichia coli UTI89], gi|910714...
gi|190905986, gi... - gi|191173736|ref|ZP_03035259.1| ABC transporter, ATP-binding protein [Escherichia coli F11], gi|1909...
gi|13360356, gi|... - gi|15830151|ref|NP_308924.1| putative ATP-binding component of a transport system [Escherichia coli ...
gi|191166150, gi... - gi|191166150|ref|ZP_03027984.1| ABC transporter, ATP-binding protein [Escherichia coli B7A], gi|1909...
gi|208726047, gi... - gi|208806246|ref|ZP_03248583.1| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ...
gi|195936861 - gi|195936861|ref|ZP_03082243.1| ABC transporter ATP-binding protein [Escherichia coli O157:H7 str. E...
gi|194422618, gi... - gi|194438394|ref|ZP_03070484.1| ABC transporter, ATP-binding protein [Escherichia coli 101-1], gi|19...
gi|194428232, gi... - gi|194428232|ref|ZP_03060775.1| ABC transporter, ATP-binding protein [Escherichia coli B171], gi|194...
EG13325 - ABC-F family putative regulatory ATPase / ABC-F family putative regulatory ATPase, function unknown
YBIT_ECO57 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV...
YBIT_ECOL6 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ...
gi|15800572, gi|... - gi|15800572|ref|NP_286584.1| putative ATP-binding component of a transport system [Escherichia coli ...
EG13325 - ABC-F family putative regulatory ATPase / ABC-F family putative regulatory ATPase, function unknown
YBIT_ECOLI - Hypothetical ABC transporter ATP-binding protein ybiT - Escherichia coli
gi|124501382, gi... - gi|124527037|ref|ZP_01698874.1| ABC transporter related [Escherichia coli B], gi|124501382|gb|EAY488...
YBIT_ECOL6 - Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6 GN=ybiT PE=3 SV=1
gi|117623000, gi... - gi|117623000|ref|YP_851913.1| putative ATP-binding component of a transport system [Escherichia coli...
0.0 [198..739] [1..527]
YB89_SCHPO - Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe (strain 9...
SPBC29A3.09c - AAA family ATPase Gcn20
0.0 [7..744] [4..730]
gi|161614905, gi... - gi|161614905|ref|YP_001588870.1| hypothetical protein SPAB_02659 [Salmonella enterica subsp. enteric...
gi|29138101, gi|... - gi|29142470|ref|NP_805812.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric...
gi|205359777, gi... - gi|205359777|ref|ZP_02832006.2| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...
gi|16759757 - gi|16759757|ref|NP_455374.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric...
gi|204929952, gi... - gi|204929952|ref|ZP_03220973.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...
gi|194450745, gi... - gi|194450745|ref|YP_002044869.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent...
gi|25384376, gi|... - gi|25384376|pir||AD0602 ABC transporter ATP-binding protein ybiT [imported] - Salmonella enterica su...
gi|168240712, gi... - gi|205340051|gb|EDZ26815.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica...
gi|214000405 - gi|214000405|ref|ZP_03411140.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...
gi|213051894 - gi|213051894|ref|ZP_03344772.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...
0.0 [198..739] [1..527]
lcl|NC_016856.1_... - [gene=ybiT] [protein=putative ABC transporter ATPase component] [protein_id=YP_005236571.1] [locatio...
gi|205347671, gi... - gi|205360674|ref|ZP_02685626.2| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent...
gi|206708077, gi... - gi|207856274|ref|YP_002242925.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent...
gi|205352093, gi... - gi|205352093|ref|YP_002225894.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ent...
gi|205357759, gi... - gi|205357759|ref|ZP_02573178.2| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent...
gi|197212230, gi... - gi|197248527|ref|YP_002145797.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en...
gi|16764200, gi|... - gi|16764200|ref|NP_459815.1| putative ABC transporter ATPase component [Salmonella typhimurium LT2],...
gi|197262584, gi... - gi|197262584|ref|ZP_03162658.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent...
gi|194454901, gi... - gi|194468537|ref|ZP_03074521.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent...
gi|195631057, gi... - gi|195874068|ref|ZP_02700307.2| ABC transporter, ATP-binding protein [Salmonella enterica subsp. ent...
gi|168230746, gi... - gi|205334699|gb|EDZ21463.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. enteric...
gi|194404671, gi... - gi|194446008|ref|YP_002040077.1| ABC transporter, ATP-binding protein [Salmonella enterica subsp. en...
gi|238913905 - gi|238913905|ref|ZP_04657742.1| ABC transporter ATP-binding protein [Salmonella enterica subsp. ente...
0.0 [198..739] [1..527]
CG9330-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9330 (CG9330, FBgn0036888). It is a protein...
0.0 [1..745] [1..706]
ABCF3 - ATP-binding cassette, sub-family F (GCN20), member 3
0.0 [1..746] [1..706]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIGSQVRK AASSIDPIVT DYAVGYFNHL SGITFDAVQS KQVDLSTEVQ FVSDLLIDAG  60
   61 ASKAKVKELS ESILKQLTTQ LKENEAKLEL TGDTSKRLLD INVLKSHNSK SDINVSLSML 120
  121 GVNGDIEHTG RKMETRVDLK KLAKAEQKIA KKVAKRNNKF VKYEASKLIN DQKEEDYDSF 180
  181 FL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [183-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QINPLEFGSS AGKSKDIHID TFDLYVGDGQ RILSNAQLTL SFGHRYGLVG QNGIGKSTLL  60
   61 RALSRRELNV PKHVSILHVE QELRGDDTKA LQSVLDADVW RKQLLSEEAK INERLKEMDV 120
  121 LRQEFEEDSL EVKKLDNERE DLDNHLIQIS DKLVDMESDK AEARAASILY GLGFSTEAQQ 180
  181 QPTNSFSGGW RMRLSLARAL FCQPDLLLLD EPSNMLDVPS IAYLAEYLKT YPNTVLTVSH 240
  241 DRAFLNEVAT DIIYQHNERL DYYRGQDFDT FYTTKEERRK NAQREYDNQM VYRKHLQEFI 300
  301 DKYRYNAAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.30103
Match: 1b0uA_
Description: ATP-binding subunit of the histidine permease
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [492-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQEAQSRIKK LEKLPVLEPP EQDKTIDFKF PECDKLSPPI IQLQDVSFGY DENNLLLKDV  60
   61 NLDVQMDSRI ALVGANGCGK TTLLKIMMEQ LRPLKGFVSR NPRLRIGYFT QHHVDSMDLT 120
  121 TSAVDWMSKS FPGKTDEEYR RHLGSFGITG TLGLQKMQLL SGGQKSRVAF AALCLNNPHI 180
  181 LVLDEPSNHL DTTGLDALVE ALKNFNGGVL MVSHDISVID SVCKEIWVSE QGTVKRFEGT 240
  241 IYDYRDYILQ SADAAGVVKK H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 127.917458
Match: 1jsqA_
Description: MsbA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle