YRC Public Data Repository - Protein Structure Prediction

Protein:	YFH7
Organism:	Saccharomyces cerevisiae
Length:	353 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFH7.

Description	E-value	Query Range	Subject Range
YFH7_YEAST - ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1 YFH7 - Putative kinase with similarity to the phosphoribulokinase/uridine kinase/bacterial pantothenate kin...	0.0	[1..353]	[1..353]
gi\|15154900, gi\|... - gi\|15887395\|ref\|NP_353076.1\| pantothenate kinase [Agrobacterium tumefaciens str. C58], gi\|15154900\|g... gi\|25287574 - gi\|25287574\|pir\|\|D97363 coaA protein (AE006212) [imported] - Agrobacterium tumefaciens (strain C58, ...	4.0E-64	[31..353]	[11..322]
COAA_RHIME - Pantothenate kinase OS=Rhizobium meliloti GN=coaA PE=3 SV=1 COAA_RHIME - Pantothenate kinase OS=Rhizobium meliloti (strain 1021) GN=coaA PE=3 SV=1	8.0E-64	[50..353]	[23..320]
COAA_BRUSU - Pantothenate kinase OS=Brucella suis GN=coaA PE=3 SV=1 COAA_BRUME - Pantothenate kinase OS=Brucella melitensis GN=coaA PE=3 SV=1 COAA_BRUO2 - Pantothenate kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=coaA PE=3 SV=1 gi\|225626468, gi... - gi\|225626468\|ref\|ZP_03784507.1\| pantothenate kinase [Brucella ceti str. Cudo], gi\|225618125\|gb\|EEH15... COAA_BRUMB - Pantothenate kinase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=coaA PE=3 SV=1 COAA_BRUSU - Pantothenate kinase OS=Brucella suis biovar 1 (strain 1330) GN=coaA PE=3 SV=1 COAA_BRUME - Pantothenate kinase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=coaA ... gi\|254713508 - gi\|254713508\|ref\|ZP_05175319.1\| pantothenate kinase [Brucella ceti M644/93/1] gi\|254716136 - gi\|254716136\|ref\|ZP_05177947.1\| pantothenate kinase [Brucella ceti M13/05/1] gi\|254700719 - gi\|254700719\|ref\|ZP_05162547.1\| pantothenate kinase [Brucella suis bv. 5 str. 513] gi\|254705091 - gi\|254705091\|ref\|ZP_05166919.1\| pantothenate kinase [Brucella suis bv. 3 str. 686] gi\|254718151 - gi\|254718151\|ref\|ZP_05179962.1\| pantothenate kinase [Brucella sp. 83/13] COAA_BRUSI - Pantothenate kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=coaA PE=3 SV=1 COAA_BRUC2 - Pantothenate kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=coaA PE=3 SV=1	6.0E-60	[42..353]	[6..311]
gi\|226903057, gi... - gi\|237702744\|ref\|ZP_04533225.1\| pantothenate kinase [Escherichia sp. 3_2_53FAA], gi\|226903057\|gb\|EEH... gi\|254039233, gi... - gi\|254039233\|ref\|ZP_04873282.1\| pantothenate kinase [Escherichia sp. 1_1_43], gi\|226838468\|gb\|EEH704... gi\|147780 - gi\|147780\|gb\|AAA76838.1\| rts [Escherichia coli]	1.0E-59	[46..353]	[26..326]
COAA_ECO57 - Pantothenate kinase OS=Escherichia coli O157:H7 GN=coaA PE=3 SV=1 EG10922 - pantothenate kinase / Pantothenate kinase EG10922 - pantothenate kinase / Pantothenate kinase COAA_ECOHS - Pantothenate kinase OS=Escherichia coli O9:H4 (strain HS) GN=coaA PE=3 SV=1 COAA_ECO24 - Pantothenate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=coaA PE=3 SV=1 COAA_ECOL6 - Pantothenate kinase OS=Escherichia coli O6 GN=coaA PE=3 SV=1 gi\|189373336, gi... - gi\|189404875\|ref\|ZP_02811845.2\| pantothenate kinase [Escherichia coli O157:H7 str. EC869], gi\|189373... gi\|191169794, gi... - gi\|191169794\|ref\|ZP_03031429.1\| pantothenate kinase [Escherichia coli B7A], gi\|190900166\|gb\|EDV60080... COAA_ECOUT - Pantothenate kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=coaA PE=3 SV=2 gi\|190907026, gi... - gi\|191172722\|ref\|ZP_03034260.1\| pantothenate kinase [Escherichia coli F11], gi\|190907026\|gb\|EDV66627... COAA_ECOL5 - Pantothenate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=coaA PE=3 SV=2 gi\|192954857, gi... - gi\|193071826\|ref\|ZP_03052714.1\| pantothenate kinase [Escherichia coli E110019], gi\|192954857\|gb\|EDV8... COAA_ECOK1 - Pantothenate kinase OS=Escherichia coli O1:K1 / APEC GN=coaA PE=3 SV=2 COAA_ECODH - Pantothenate kinase OS=Escherichia coli (strain K12 / DH10B) GN=coaA PE=3 SV=1 gi\|188488437, gi... - gi\|188493238\|ref\|ZP_03000508.1\| pantothenate kinase [Escherichia coli 53638], gi\|188488437\|gb\|EDU635... gi\|189001411, gi... - gi\|189010224\|ref\|ZP_02805906.2\| pantothenate kinase [Escherichia coli O157:H7 str. EC4076], gi\|18900... gi\|189403596, gi... - gi\|189403596\|ref\|ZP_02796452.2\| pantothenate kinase [Escherichia coli O157:H7 str. EC4486], gi\|18935... COAA_ECOBW - Pantothenate kinase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=coaA PE=3 SV=1 gi\|189364937, gi... - gi\|189364937\|gb\|EDU83353.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4501], gi\|168765261... gi\|168778064, gi... - gi\|187766850\|gb\|EDU30694.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4196], gi\|168778064... gi\|253975821, gi... - gi\|254163920\|ref\|YP_003047028.1\| pantothenate kinase [Escherichia coli B str. REL606], gi\|253975821\|... gi\|251787236, gi... - gi\|251787236\|ref\|YP_003001540.1\| hypothetical protein B21_03808 [Escherichia coli BL21], gi\|24237950... gi\|253775392, gi... - gi\|254290670\|ref\|YP_003056418.1\| pantothenate kinase [Escherichia coli BL21(DE3)], gi\|253979977\|gb\|A... COAA_ECO55 - Pantothenate kinase OS=Escherichia coli (strain 55989 / EAEC) GN=coaA PE=3 SV=1 COAA_ECO7I - Pantothenate kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=coaA PE=3 SV=1 COAA_ECOL6 - Pantothenate kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaA PE=3 SV=1 COAA_ESCF3 - Pantothenate kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=coaA ... sp\|B7UNV0\|COAA_ECO27 - Pantothenate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=coaA PE=3 SV=1 COAA_ECO8A - Pantothenate kinase OS=Escherichia coli O8 (strain IAI1) GN=coaA PE=3 SV=1 COAA_ECOLI - Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid kinase) (Rts protein) - Escherichia coli COAA_ECO45 - Pantothenate kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=coaA PE=3 SV=1 COAA_ECO81 - Pantothenate kinase OS=Escherichia coli O81 (strain ED1a) GN=coaA PE=3 SV=1 gi\|89110060, gi\|... - gi\|89110060\|ref\|AP_003840.1\| pantothenate kinase [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|208814263, gi... - gi\|208814263\|ref\|ZP_03255592.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208739764, gi... - gi\|208819641\|ref\|ZP_03259961.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4042], gi\|20873... COAA_ECO27 - Pantothenate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=coaA PE=3 SV=1 COAA_SHISS - Pantothenate kinase OS=Shigella sonnei (strain Ss046) GN=coaA PE=3 SV=1 gi\|15834155, gi\|... - gi\|15834155\|ref\|NP_312928.1\| pantothenate kinase [Escherichia coli O157:H7 str. Sakai], gi\|13364377\|... gi\|217320830, gi... - gi\|217324609\|ref\|ZP_03440693.1\| pantothenate kinase [Escherichia coli O157:H7 str. TW14588], gi\|2173...	2.0E-59	[46..353]	[6..306]
gi\|229706564, gi... - gi\|229836496\|ref\|ZP_04456663.1\| pantothenate kinase [Yersinia pestis Pestoides A], gi\|229706564\|gb\|E... COAA_YERPS - Pantothenate kinase OS=Yersinia pseudotuberculosis GN=coaA PE=3 SV=1 gi\|229695807, gi... - gi\|229839441\|ref\|ZP_04459600.1\| pantothenate kinase [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|229686948, gi... - gi\|229900004\|ref\|ZP_04515142.1\| pantothenate kinase [Yersinia pestis biovar Orientalis str. India 19... gi\|149289316, gi... - gi\|153997208\|ref\|ZP_02022315.1\| pantothenate kinase [Yersinia pestis CA88-4125], gi\|149289316\|gb\|EDM... COAA_YERPP - Pantothenate kinase OS=Yersinia pestis (strain Pestoides F) GN=coaA PE=3 SV=1 COAA_YERPE - Pantothenate kinase OS=Yersinia pestis GN=coaA PE=3 SV=1 COAA_YERPG - Pantothenate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=coaA PE=3 SV=1 COAA_YERP3 - Pantothenate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=coaA PE=3 SV=1 COAA_YERPA - Pantothenate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=coaA PE=3 SV=1 COAA_YERPN - Pantothenate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=coaA PE=3 SV=1 COAA_YERPB - Pantothenate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=coaA PE=3 SV=1 gi\|165912058, gi... - gi\|89102990\|ref\|ZP_01175588.1\| COG1072: Panthothenate kinase [Yersinia pestis biovar Orientalis str.... gi\|165988950, gi... - gi\|166012149\|ref\|ZP_02233047.1\| pantothenate kinase [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165926264, gi... - gi\|165926264\|ref\|ZP_02222096.1\| pantothenate kinase [Yersinia pestis biovar Orientalis str. F1991016... gi\|167399681, gi... - gi\|167399681\|ref\|ZP_02305205.1\| pantothenate kinase [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166204188, gi... - gi\|166214625\|ref\|ZP_02240660.1\| pantothenate kinase [Yersinia pestis biovar Antiqua str. B42003004],... gi\|45437908, gi\|... - gi\|45443041\|ref\|NP_994580.1\| pantothenate kinase [Yersinia pestis biovar Microtus str. 91001], gi\|45... gi\|167054182, gi... - gi\|167426800\|ref\|ZP_02318553.1\| pantothenate kinase [Yersinia pestis biovar Mediaevalis str. K197300... gi\|22124388, gi\|... - gi\|22124388\|ref\|NP_667811.1\| pantothenate kinase [Yersinia pestis KIM], gi\|21957169\|gb\|AAM84062.1\|AE... gi\|167422996, gi... - gi\|167422996\|ref\|ZP_02314749.1\| pantothenate kinase [Yersinia pestis biovar Orientalis str. MG05-102... gi\|15981674, gi\|... - gi\|218930763\|ref\|YP_002348638.1\| pantothenate kinase [Yersinia pestis CO92], gi\|16123895\|ref\|NP_4072... COAA_YERPY - Pantothenate kinase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=coaA PE=3 SV=1 COAA_YERPS - Pantothenate kinase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=coaA PE=3 SV=1 gi\|167470585 - gi\|167470585\|ref\|ZP_02335289.1\| pantothenate kinase [Yersinia pestis FV-1]	5.0E-59	[46..353]	[6..306]
COAA_RHILO - Pantothenate kinase OS=Rhizobium loti GN=coaA PE=3 SV=1 COAA_RHILO - Pantothenate kinase OS=Rhizobium loti (strain MAFF303099) GN=coaA PE=3 SV=1	7.0E-59	[42..353]	[2..308]
gi\|254795977, gi... - gi\|254795977\|ref\|YP_003080814.1\| pantothenate kinase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|145561, gi\|55... - gi\|55669763\|pdb\|1SQ5\|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase, gi\|55669762\|pdb\|1S... gi\|208727068, gi... - gi\|208807267\|ref\|ZP_03249604.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|170022018, gi... - gi\|170022018\|ref\|YP_001726972.1\| pantothenate kinase [Escherichia coli ATCC 8739], gi\|169756946\|gb\|A... gi\|209921456, gi... - gi\|209921456\|ref\|YP_002295540.1\| pantothenate kinase [Escherichia coli SE11], gi\|209914715\|dbj\|BAG79... gi\|15804568, gi\|... - gi\|15804568\|ref\|NP_290609.1\| pantothenate kinase [Escherichia coli O157:H7 EDL933], gi\|12518900\|gb\|A... gi\|209158390, gi... - gi\|209396990\|ref\|YP_002273494.1\| pantothenate kinase [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|75188709 - gi\|75188709\|ref\|ZP_00701976.1\| COG1072: Panthothenate kinase [Escherichia coli E24377A] gi\|83584485 - gi\|83584485\|ref\|ZP_00923167.1\| COG1072: Panthothenate kinase [Escherichia coli 101-1] gi\|75255022 - gi\|75255022\|ref\|ZP_00726938.1\| COG1072: Panthothenate kinase [Escherichia coli E22] gi\|75240371 - gi\|75240371\|ref\|ZP_00724311.1\| COG1072: Panthothenate kinase [Escherichia coli F11] gi\|75214530 - gi\|75214530\|ref\|ZP_00713098.1\| COG1072: Panthothenate kinase [Escherichia coli E110019] gi\|75197843 - gi\|75197843\|ref\|ZP_00707913.1\| COG1072: Panthothenate kinase [Escherichia coli HS]	5.0E-58	[49..353]	[1..298]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTHKLADD VLQLLDNRIE DNYRVCVILV GSPGSGKSTI AEELCQIINE KYHTFLSEHP  60
   61 NVIEVNDRLK PMVNLVDSLK TLQPNKVAEM IENQGLFKDH VEDVNFQPVK YSALTSNNEE 120
  121 CTAVVARGGT ANAIRIAAVD NPVNVNKLAQ DSINIAQIVP MDGFHLSRRC LDLFKDPQTA 180
  181 HKRRGSPSTF DSNNFLQLCK ILAKTSLCKV SSHHKFYSTS SVFEKLSKTF SQTIPDIFVP 240
  241 GFNHALKDPT PDQYCISKFT RIVILEGLYL LYDQENWKKI YKTLADTGAL LVYKIDIDYE 300
  301 ATEERVAKRH LQSGLVTTIA EGREKFRSND LLNGRDIDNH LIKVDNIVHI RND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1esmA_
Description:	Pantothenate kinase PanK
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits