YRC Public Data Repository - Protein Structure Prediction

Protein:	YFR006W
Organism:	Saccharomyces cerevisiae
Length:	535 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFR006W.

Description	E-value	Query Range	Subject Range
YFH6_YEAST - Uncharacterized peptidase YFR006W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFR006... YFR006W - Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytop...	0.0	[1..535]	[1..535]
gi\|3114966 - gi\|3114966\|emb\|CAA75230.1\| prolidase [Suberites domuncula]	0.0	[63..527]	[16..495]
PEPD_MOUSE - Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=1 SV=3	0.0	[54..525]	[1..484]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[54..525]	[1..484]
gi\|13363251, gi\|... - gi\|15833033\|ref\|NP_311806.1\| proline aminopeptidase P II [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|13363251, gi\|... - gi\|15833033\|ref\|NP_311806.1\| proline aminopeptidase P II [Escherichia coli O157:H7], gi\|13363251\|dbj... gi\|209760450, gi... - pir\|\|G85946 proline aminopeptidase P II [imported] - Escherichia coli (strain O157:H7, substrain ED... gi\|15803443, gi\|... - gi\|15803443\|ref\|NP_289476.1\| proline aminopeptidase P II [Escherichia coli O157:H7 EDL933], gi\|12517... gi\|254794857, gi... - gi\|254794857\|ref\|YP_003079694.1\| proline aminopeptidase P II [Escherichia coli O157:H7 str. TW14359]... gi\|217326697, gi... - gi\|217326697\|ref\|ZP_03442780.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|195936526 - gi\|195936526\|ref\|ZP_03081908.1\| proline aminopeptidase P II [Escherichia coli O157:H7 str. EC4024] gi\|208733741, gi... - gi\|208812464\|ref\|ZP_03253793.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208741670, gi... - gi\|208821547\|ref\|ZP_03261867.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|209398591, gi... - gi\|209398591\|ref\|YP_002272384.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|168775788, gi... - gi\|187768811\|gb\|EDU32655.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4196], gi\|168775... gi\|168778924, gi... - gi\|189003609\|gb\|EDU72595.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4076], gi\|168778... gi\|168785757, gi... - gi\|189373889\|gb\|EDU92305.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC869], gi\|1687857... gi\|189377684, gi... - gi\|189377684\|gb\|EDU96100.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC508], gi\|1688000... gi\|168747610, gi... - gi\|188017799\|gb\|EDU55921.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4113], gi\|168747... gi\|189358530, gi... - gi\|189358530\|gb\|EDU76949.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4401], gi\|168753... gi\|189369256, gi... - gi\|189369256\|gb\|EDU87672.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4501], gi\|168760... gi\|189363746, gi... - gi\|189363746\|gb\|EDU82165.1\| Xaa-Pro aminopeptidase [Escherichia coli O157:H7 str. EC4486], gi\|168766...	4.0E-97	[69..526]	[1..441]
gi\|83587696, gi\|... - gi\|83587696\|ref\|ZP_00926323.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli 101-1], gi\|19443678... gi\|170082468, gi... - gi\|170082468\|ref\|YP_001731788.1\| proline aminopeptidase P II [Escherichia coli str. K-12 substr. DH1... AMPP_ECOLI - Xaa-Pro aminopeptidase (EC 3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II) (APP-II) (Aminoacy... EG10697 - proline aminopeptidase P II / Proline aminopeptidase, homotetrameric; aminopeptidase P gi\|238902033, gi... - gi\|238902033\|ref\|YP_002927829.1\| proline aminopeptidase P II [Escherichia coli BW2952], gi\|238863278... EG10697 - proline aminopeptidase P II / Proline aminopeptidase, homotetrameric; aminopeptidase P gi\|216529\|dbj\|BA... - aminopeptidase P precursor [Escherichia coli] gi\|85675720, gi\|... - gi\|89109687\|ref\|AP_003467.1\| proline aminopeptidase P II [Escherichia coli str. K-12 substr. W3110],...	6.0E-97	[69..526]	[1..441]
AMPP_ECOLI - (P15034) Xaa-Pro aminopeptidase (EC 3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II) (APP-II) ...	1.0E-96	[71..526]	[2..440]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLEPISLVV FGSLVFFFGL VKYFKRGERQ RTRGILQPEY KDKYYYSKEK GEEMGEVANV  60
   61 NEIPVKIRNH KYPAKEHNLR VKDLLLNRNP KLSKISTAFF IAGEELEGNK YCDTNKDFRQ 120
  121 NRYFYHLSGV DIPASAILFN CSTDKLTLFL PNIDEEDVIW SGMPLSLDEA MRVFDIDEAL 180
  181 YISDLGKKFK ELQDFAIFTT DLDNVHDENI ARSLIPSDPN FFYAMDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	508.9691
Match:	1az9__
Description:	Aminopeptidase P; Aminopeptidase P, C-terminal domain

Predicted Domain #2

Region A:
Residues: [228-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRAIKDWYEI ESIRKACQIS DKSHLAVMSA LPIELNELQI QAEFEYHATR QGGRSLGYDP  60
   61 ICCSGPACGT LHYVKNSEDI KGKHSILIDA GAEWRQYTSD ITRCFPTSGK FTAEHREVYE 120
  121 TVLDMQNQAM ERIKPGAKWD DLHALTHKVL IKHFLSMGIF KKEFSEDEIF KRRASCAFYP 180
  181 HGLGHMLGLD VHDVGGNPNY DDPDPMFRYL RIRRPLKENM VITNEPGCYF NQFLIKEFLE 240
  241 KHPERLEVVD MSVLKRYMYV GGVRIEDDIL VTKDGYENLT GITSDPDEIE KIVQKGLKKP 300
  301 RSGFHVIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	508.9691
Match:	1az9__
Description:	Aminopeptidase P; Aminopeptidase P, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits