YRC Public Data Repository - Protein Structure Prediction

Protein:	YFL066C
Organism:	Saccharomyces cerevisiae
Length:	392 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL066C.

Description	E-value	Query Range	Subject Range
DDX3L_MOUSE - Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1	0.0	[1..388]	[213..585]
DDX3Y - DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	0.0	[1..388]	[211..584]
DDX3_XENLA - Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1	0.0	[1..381]	[255..620]
gi\|3986285 - gi\|3986285\|dbj\|BAA34993.1\| DjVLGA [Dugesia japonica]	0.0	[1..382]	[245..605]
DBP1 - Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability o... DBP1_YEAST - ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DBP1 PE=...	0.0	[3..380]	[190..548]
gi\|10039327 - gi\|10039327\|dbj\|BAB13306.1\| PL10-related protein CnPL10 [Hydra magnipapillata]	0.0	[1..377]	[205..565]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTPSVAVQ APPGYGKTEL FHLPLIALAS KGDVKYVSFL FVPYTVLLAN CMIRLGRRGC  60
   61 LNVAPVRNFI EEGYDGVTDL YVGIYDDLAS TNFTDRIAAW ENIVECTFRT NNVKLGYLIV 120
  121 DEFHNFETEV YRQSQFGGIT NLDFDAFEKA IFLSGTAPEA VADAALQRIG LTGLAKKSMD 180
  181 INELKRSEDL SRGLSSYPTR MFNLIKEKSE VPLGHVHKIW KKVESQPEEA LKLLLALFEI 240
  241 EPESKAIVVA STTNEVEELA CSWRKYFRVV WIHGKLGAAE KVSRTKEFVT DGSMQVLIGT 300
  301 KLVTEGIDIK QLMMVIMLDN RLNIIELIQG VGRLRDGGLC YLLSRKNSWA ARNRKGELPP 360
  361 IKEGCITEQV REFYGLESKK GKKGQHVGCC VC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	150.66807
Match:	1fuuA_
Description:	Initiation factor 4a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits