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View Structure Prediction Details

Protein: SNZ3
Organism: Saccharomyces cerevisiae
Length: 298 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNZ3.

Description E-value Query
Range		 Subject
Range
PDX1_HEVBR - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1
 0.0 [2..296] [21..307]
PDX13_ARATH - Pyridoxal 5'-phosphate synthase subunit PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2
 0.0 [2..296] [21..307]
PDX1_PHAVU - Pyridoxal 5'-phosphate synthase subunit PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1
 0.0 [2..296] [24..310]
PDX1_GINBI - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1
 0.0 [1..296] [20..307]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [2..298] [54..343]
SNZ2 - Member of a stationary phase-induced gene family; transcription of SNZ2 is induced prior to diauxic ...
SNZ2_YEAST - Probable pyridoxal 5'-phosphate synthase subunit SNZ2 OS=Saccharomyces cerevisiae (strain ATCC 20450...
 0.0 [1..298] [1..298]
PDX12_ORYSJ - Probable pyridoxal 5'-phosphate synthase subunit PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=...
PDX12_ORYSA - Probable pyridoxal biosynthesis protein PDX1.2 - Oryza sativa (Rice)
 0.0 [3..292] [24..311]

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Predicted Domain #1
Region A:
Residues: [1-190] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFKVKTGL AQMLKGGVIM DVVTPEQAII AERAGACAVM ALERIPADMR KSGQVCRMSD  60
   61 PRMIKEIMEA VSIPVMAKVR IGHFVEAQIL EELQVDYIDE SEVLTPADWT HHIEKHNFKV 120
  121 PFVCGAKDLG EALRRINEGA AMIRTKGEAG TGDVSEAVKH ITKIKAEIQQ YKENLKTESD 180
  181 FAAKATELRV

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.86
Match: 1gt8A
Description: Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [191-298] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVDLLKTTLS EGKLPVVNFA AGGVATPADA ALLMQLGCEG VFVGSGIFKS SDPEKLACAI  60
   61 VEATTHYDNP AKLLQVSSDL GDLMGGISIQ SINEAGGKNG ARLSEIGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.30103
Match: 2tpsA_
Description: Thiamin phosphate synthase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle