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View Structure Prediction Details

Protein: WWM1
Organism: Saccharomyces cerevisiae
Length: 211 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WWM1.

Description E-value Query
Range
Subject
Range
gi|190691513, gi... - gi|190691513|gb|ACE87531.1| WW domain containing E3 ubiquitin protein ligase 1 protein [synthetic co...
WWP1 - WW domain containing E3 ubiquitin protein ligase 1
1.0E-43 [6..131] [346..469]
WWP2_MOUSE - NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=1 SV=1
7.0E-41 [8..130] [299..417]
Su(dx)-PB, Su(dx... - The gene Suppressor of deltex is referred to in FlyBase by the symbol Dmel\Su(dx) (CG4244, FBgn00035...
2.0E-35 [6..130] [360..489]
gi|2347056 - gi|2347056|emb|CAA03915.1| Nedd4 protein [Xenopus laevis]
2.0E-33 [7..131] [379..506]

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Predicted Domain #1
Region A:
Residues: [1-52]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSKSNPPQ VPSGWKAVFD DEYQTWYYVD LSTNSSQWEP PRGTTWPRPK GP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.39794
Match: 1f8aB_
Description: Mitotic rotamase PIN1; Mitotic rotamase PIN1, domain 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.24368858184725 bayes_pls_golite062009
protein binding 0.261137474693717 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [53-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPGVNNEKSS RQQADQAPPP YSSQSTPQVQ AGAQAQQPRY YQPQQPQYPQ YPQQQRYYPQ  60
   61 QAPMPAAAPQ QAYYGTAPST SKGSGHGGAM MGGLLGVGAG LLGGAMLEHA FDDHNYDGPD 120
  121 TVVVENNYYG DDAGGSDGGF DDAGGFDGGF DDGFDGSDF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle