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View Structure Prediction Details

Protein: CDC4
Organism: Saccharomyces cerevisiae
Length: 779 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC4.

Description E-value Query
Range
Subject
Range
gi|3503 - gi|3503|emb|CAA29113.1| unnamed protein product [Saccharomyces cerevisiae]
0.0 [1..779] [1..779]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [183..777] [842..1476]
gi|17225210 - gi|17225210|gb|AAL37301.1|AF323585_1 beta transducin-like protein HET-D2Y [Podospora anserina]
0.0 [220..774] [797..1314]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSFPLAEFP LRDIPVPYSY RVSGGIASSG SVTALVTAAG THRNSSTAKT VETEDGEEDI  60
   61 DEYQRKRAAG SGESTPERSD FKRVKHDNHK TLHPVNLQNT GAASVDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLHNLTDIS NDAEKLLMSV DDGSAAPSTL SVNMGVASHN VAAPTTVNAA TITGSDVSNN  60
   61 VNSATINNPM EEGALPLSPT ASSPGTTTPL AKTTKTINNN NNIADLIESK DSIISPEYLS 120
  121 DEIFSAINNN LPHAYFKNLL FRLVANMDRS ELSDLGTLIK DNLKRDLITS LPFEISLKIF 180
  181 NYLQFEDIIN SLGVSQNWNK IIRKSTSLWK KLLISENFVS PKGFNSLNLK LSQKYPKLSQ 240
  241 QDRLRLSFLE NIFILKNWYN PKFVPQRTTL RGHMTSVITC LQFEDNYVIT GADDKMIRVY 300
  301 DSINKKFLLQ LSGHDGGVWA LKYAHGGILV SGSTDRTVRV WDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1gxrA_
Description: Groucho/tle1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [451-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKGCCTHVFK GHNSTVRCLD IVEYKNIKYI VTGSRDNTLH VWKLPKESSV PDHGEEHDYP  60
   61 LVFHTPEENP YFVGVLRGHM ASVRTVSGHG NIVVSGSYDN TLIVWDVAQM KCLYILSGHT 120
  121 DRIYSTIYDH ERKRCISASM DTTIRIWDLE N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 225.9794
Match: 1erjA_
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [602-779]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IWNNGECSYA TNSASPCAKI LGAMYTLQGH TALVGLLRLS DKFLVSAAAD GSIRGWDAND  60
   61 YSRKFSYHHT NLSAITTFYV SDNILVSGSE NQFNIYNLRS GKLVHANILK DADQIWSVNF 120
  121 KGKTLVAAVE KDGQSFLEIL DFSKASKINY VSNPVNSSSS SLESISTSLG LTRTTIIP

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 14.28
Match: 1jjuB
Description: Quinohemoprotein amine dehydrogenase B chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle