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View Structure Prediction Details

Protein: YFL006W
Organism: Saccharomyces cerevisiae
Length: 254 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL006W.

Description E-value Query
Range
Subject
Range
gi|9294539 - gi|9294539|dbj|BAB02802.1| unnamed protein product [Arabidopsis thaliana]
1.0E-88 [13..253] [1476..1714]
gi|559330 - gi|559330|dbj|BAA07526.1| KIAA0077 [Homo sapiens]
2.0E-76 [35..254] [1577..1798]
gi|13435418 - gi|13435418|gb|AAH04575.1| Psme4 protein [Mus musculus]
5.0E-65 [73..254] [1..188]
CE05284 - Human mRNA (KIAA0077) product like status:Partially_confirmed UniProt:Q17971 protein_id:CAA98425.1
5.0E-51 [34..253] [1702..1907]
gi|14599400 - gi|14599400|emb|CAC43452.1| unknown hypothetical protein, W03G5.01 [Pneumocystis carinii]
9.0E-38 [133..254] [3..120]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGPNKVLL VPYLVDYVLP FLIGLVKHKD VCALASLDPV RLYAGLGYMP IRKNHVAAIV  60
   61 DYVCSSNVAL SSNQTKLQLA FIQHFLSAEL LQLTEEEKNK ILEFVVSNLY NEQFVEVRVR 120
  121 AASILSDIVH NWKEEQPLLS LIERFAKGLD VNKYTSKERQ KLSKTDIKIH GNVLGLGAII 180
  181 SAFPYVFPLP PWIPKQLSNL SSWARTSGMT GQAAKNTISE FKKVRADTWK FDRASFNTEE 240
  241 LEDLEGVLWR SYYA

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.89
Match: 1b3uA
Description: Constant regulatory domain of protein phosphatase 2a, pr65alpha
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle