| Protein: | SPB4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 606 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPB4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..606] | [1..606] |
|
|
0.0 | [6..409] | [148..533] |
|
|
0.0 | [6..408] | [181..579] |
|
|
0.0 | [6..431] | [180..602] |
|
|
0.0 | [3..405] | [135..518] |
|
|
0.0 | [5..406] | [194..589] |
|
|
0.0 | [6..422] | [172..583] |
|
|
0.0 | [7..409] | [151..535] |
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 MSKSLEWDNL GFSLLPWIRT GLDVMGFETM TPVQASTIPM LAGNKDVVVD SVTGSGKTAA 60
61 FVIPVLEKVV KEEANTSKFK KAHFHSLIIA PTRELSRQIE SVVLSFLEHY PSDLFPIKCQ 120
121 LLVGTNEATV RDDVSNFLRN RPQILIGTPG RVLDFLQMPA VKTSACSMVV MDEADRLLDM 180
181 SFIKDTEKIL RLLPKQRRTG LFSATMRSAG SDIFKTGLRN PVRITVNSKN Q
|
| Detection Method: |  |
| Confidence: | 431.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [232-388] |
1 11 21 31 41 51
| | | | | |
1 APSSLKLNYC VVNPAEKLQL LVSILNNYKF KKCIVYFPTC VSVSYFYSFI QYLGKRNILV 60
61 NEVEIFSLHG KLQTSARTKT LTAFTDSLSN SVLFTTDVAA RGIDIPDVDL VIQLDPPTNT 120
121 DMFMHRCGRT GRANRVGKAI TFLNEGREED FIPFMQV
|
| Detection Method: | |
| Confidence: | 431.0 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [389-519] |
1 11 21 31 41 51
| | | | | |
1 KNVELEELDL EVKGITTNFY EDFRNWILED RDRFDKGVKA YVAFIKYYSN HSATSIFRLQ 60
61 SLDYVGIAKL YGLFRLPRMP EITKYLATEK QEGIFPGNWL VDPPVNMDEY KYKDKKREKE 120
121 RQETLKNISL I
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [520-606] |
1 11 21 31 41 51
| | | | | |
1 NDKKKLKSEL KKKNLAWSDK TLTKERKLER KEKMSLKRKA IEEELKAEEL DENAEEERIK 60
61 EDWKEIVLQN KRKKVSSKAI QGNFDDL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
