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View Structure Prediction Details

Protein: YER184C
Organism: Saccharomyces cerevisiae
Length: 794 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YER184C.

Description E-value Query
Range
Subject
Range
PDR3 - Transcriptional activator of the pleiotropic drug resistance network, regulates expression of ATP-bi...
PDR3_YEAST - Transcription factor PDR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDR3 PE=1 SV=2
551.0 [0..7] [750..4]
gi|19113716 - gi|19113716|ref|NP_592804.1| hypothetical protein SPAC11D3.07c [Schizosaccharomyces pombe 972h-]
SPAC11D3.07c - transcription factor
327.0 [0..16] [595..5]
gi|1706177 - sp|P52959|CT1B_FUSSO CUTINASE TRANSCRIPTION FACTOR 1 BETA
CTF1B_FUSSO - Cutinase transcription factor 1 beta OS=Fusarium solani subsp. pisi GN=CTF1-BETA PE=2 SV=1
275.0 [0..2] [508..32]
gi|245224 - gi|245224|gb|AAB21394.1| NIT4=protein product involved in nitrate assimilation [Neurospora intermedi...
NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 - Neurospora crassa
270.0 [0..3] [491..38]
NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1...
NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa GN=nit-4 PE=4 SV=2
268.0 [0..3] [491..38]
gi|116180200, gi... - gi|88185025|gb|EAQ92493.1| hypothetical protein CHGG_00728 [Chaetomium globosum CBS 148.51], gi|1161...
251.0 [0..7] [506..13]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKRGLAKQ KSRVTKACDR CHRKKIKCNS KKPCFGCIGS QSKCTYRNQF REPIEAFFNY  60
   61 TGSLSNDLDN AKCSIAKLKA Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1hwtC
Description: Hap1 (Cyp1); HAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [82-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPSAPASLQ KGLANICTEL EKIQPQLYLN LDSKEISSYG GLKSIETEII GKQSKSLNRF  60
   61 SNAFESNTAQ NVSMYFGVYS PLLYFASTGI SWITKKLISC SNDR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.959 a.29.13 Description not found.

Predicted Domain #3
Region A:
Residues: [186-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETRETIYLFL KFLDASSASH AGPKVTSISP LEYYSKLNGL SCGNDVLIQH IMSNISNEIK  60
   61 GNTNINQTIK FNKPTDWFMY GVQLMEQHHK ALDRKSSKKL LPLKYFLEQD ELIFCLCLEY 120
  121 FERSLFSTMY DLTILKGLVS LMKHRYWIDD PFVLGRIIST MSRRSLDAGL NRWEYYIGQD 180
  181 EDTAEEYRKL WWDCYWWDRW YSLVTGKQPL IPHEMTSCLF PKDVVGLGVD DSMDCFTLIN 240
  241 LVELDPSKFD ICISFGYILL TKIITAVFSG LLYN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [460-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHFTDYRLFA TPNAKDLNGT ARQLMVEFSK ICKIFQCIQD KLIPFLKQYS ENSNVFELYT  60
   61 HFGFAKVCCF QGMESLILRI QNLLQERERI ELDSCVKDIR LQTFEASVDI LTDVLKHEDT 120
  121 FYIFRCSWFI YAILMNITLN FIETPRRNSI CYLSLMCRMI ASYNDLFVSS GNVNFKGNNA 180
  181 FSKKLENGTA VSFILTRICC QMYTRSQKMA KESLFCELKK YGQACSDAGQ AALDIECIWY 240
  241 RNIIGEHKES SFRKEILSIL DREMGDLVNN RVIGVQGKNQ EGACYEKLSP SSTSVSVGMD 300
  301 FCSLENFVTA ESLPDLLNLF WEDTEFGITK ENLGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle