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View Structure Prediction Details

Protein: COG3
Organism: Saccharomyces cerevisiae
Length: 801 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COG3.

Description E-value Query
Range
Subject
Range
COG3_YEAST - Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
COG3 - Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tet...
0.0 [1..801] [1..801]
COG3 - component of oligomeric golgi complex 3
0.0 [70..758] [117..802]
COG3_SCHPO - Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...
cog3 - Golgi transport complex subunit Cog3
0.0 [75..756] [103..701]

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Predicted Domain #1
Region A:
Residues: [1-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSRKNSLV RDIASHPTIP ESQTIVGLLD DSYLFDKLKK LSLAVENSDS LQRTDVSEGC  60
   61 SEVNGSEATT SADVKKTNKY LYYTTYLDQL NIKIDEYKVV LDQTRQVNDQ LDSSIKKFRK 120
  121 ISQDTGAFIE ETKTIYEKQS KLSNLTESIP KALHYFEVLD PIMRRLNHAT SPAIVKKSSF 180
  181 TTMLATIDES LRFLDENSDL KDAAAYRIKF KQCLIRACEL ISHFLTNLLK QTNQEILDKT 240
  241 KNKNSLTGLP STTRDAFLYS KFYTIADTFK IQVSEIVKRS NEKAYNKYHD ELNSILYECF 300
  301 NHYFQTRLRL LTPVIWSHID EIVVKDKDQG LVKFIQDGKV YFQQLCADEY KLFVEFFPEK 360
  361 ECRFKINQWF LQLCEPLYDS IRVRVLKETD ICTLCDSVTL FAPYYEFEEG SEEY

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.74
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [415-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKQFTDIQYD KLFEPIVQKV QARLILRVQI YVQQNILSYR PTRDVFMISN RRRKSKTSLQ  60
   61 GGNEDATTSD DNPDPLLESY LSSFKNRSIL PISPNDADDK SIDSEESTDK ISQLQTYYP

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.74
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [534-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLKTLALLS KIYEMINSVV FDDLAHHVVH DCIVSLRNAY DMVIKSSAGK SDFNNLDISL  60
   61 AYLKNLLMLR DSIQNFNIQY TVNETYLDFS GVEGFFKSLK ENGRNVLKKT KSSSILTLAR 120
  121 EL

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.74
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [656-801]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPKVVNNMVD ARTELISELR NVIKDFTEST SLELIDDTLD INSDEDLLSK NVKLRENIKA  60
   61 RLPRIYEQIL NYIDDQEIVT NLLDAVQELI TQSYSKYYET ITELAENGKF AKDQVADVMY 120
  121 LDVFTDFFAK EVADLLRNGD IDTITK

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.74
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

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