YRC Public Data Repository - Protein Structure Prediction

Protein:	YER156C
Organism:	Saccharomyces cerevisiae
Length:	338 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YER156C.

Description	E-value	Query Range	Subject Range
YEY6_YEAST - UPF0160 protein YER156C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YER156C PE=1 SV=... YER156C - Putative protein of unknown function; interacts with Hsp82p and copurifies with Ipl1p; expression is...	0.0	[1..338]	[1..338]
MYG1_MOUSE - UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=1 SV=1	0.0	[5..338]	[34..366]
gi\|19699166, gi\|... - gi\|19699166\|gb\|AAL90949.1\| AT5g41970/MJC20_7 [Arabidopsis thaliana], gi\|15146292\|gb\|AAK83629.1\| AT5g...	0.0	[15..337]	[24..344]
YIW4_SCHPO - UPF0160 protein C694.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC694.04c PE=3 ... SPAC694.04c - conserved eukaryotic protein	0.0	[16..337]	[6..319]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-97	[9..337]	[1..285]
Y386_CHLTR - UPF0160 protein CT_386 OS=Chlamydia trachomatis GN=CT_386 PE=3 SV=2 gi\|255317493 - gi\|255317493\|ref\|ZP_05358739.1\| MYG1 protein [Chlamydia trachomatis 6276s] gi\|255348751 - gi\|255348751\|ref\|ZP_05380758.1\| MYG1 protein [Chlamydia trachomatis 70] gi\|255311192 - gi\|255311192\|ref\|ZP_05353762.1\| MYG1 protein [Chlamydia trachomatis 6276] gi\|166155472, gi... - gi\|166155472\|ref\|YP_001653727.1\| hypothetical protein CTLon_0639 [Chlamydia trachomatis L2b/UCH-1/pr... gi\|255503291 - gi\|255503291\|ref\|ZP_05381681.1\| MYG1 protein [Chlamydia trachomatis 70s] gi\|255506970 - gi\|255506970\|ref\|ZP_05382609.1\| MYG1 protein [Chlamydia trachomatis D(s)2923] Y386_CHLTR - UPF0160 protein CT_386 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_386 PE=3 SV=2 gi\|165930585, gi... - gi\|166154597\|ref\|YP_001654715.1\| hypothetical protein CTL0642 [Chlamydia trachomatis 434/Bu], gi\|165...	1.0E-96	[11..337]	[1..283]
gi\|7190700, gi\|1... - gi\|7190700\|gb\|AAF39487.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], ref\|NP_297039.1... gi\|7190700, gi\|1... - gi\|7190700\|gb\|AAF39487.1\| conserved hypothetical protein [Chlamydia muridarum Nigg], gi\|15835280\|ref...	2.0E-96	[9..337]	[1..285]
gi\|19074600, gi\|... - gi\|19074600\|ref\|NP_586106.1\| similarity to HYPOTHETICAL PROTEIN YEY6_yeast [Encephalitozoon cuniculi... gi\|19074600 - ref\|NP_586106.1\| similarity to HYPOTHETICAL PROTEIN YEY6_yeast [Encephalitozoon cuniculi]	7.0E-96	[17..337]	[3..299]
Y665_CHLMU - UPF0160 protein TC_0665 OS=Chlamydia muridarum GN=TC_0665 PE=3 SV=2 Y665_CHLMU - UPF0160 protein TC_0665 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0665 PE=3 SV=2	2.0E-95	[11..337]	[1..283]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVKRVKLN SKMSKQICTH SGSFHADESL AVYMLRLLPE FKDAKLVRSR NPKDWEASDI  60
   61 LVDVGAQYDG VKFFDHHQRG FFETFNEKYK TKLSSAGLIF KHYGRDIIKT ILNNKVSSSD 120
  121 LDLLYDKVYK QFVEALDAND NGISKYTIPK DSNLEPNFRD NAISIPGIIS GMNPNWNEDT 180
  181 SDESFDRCFA RASEFIGGVF VTLVRGYGQS WLPAKALVAQ AIDERMDVDK SGKIIVLPQF 240
  241 CPWKEHLYEL EREKNIEKQI EFVLFTDSSG AWRVSTVPIN STSFQFRRGL PEPLRGLRDE 300
  301 ELSTKSGVPG CIFIHAAGFI GGAKSKEAVY ELAKMSLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	244.958607
Match:	PF03690
Description:	Uncharacterised protein family (UPF0160)

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits