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View Structure Prediction Details

Protein: UBP3
Organism: Saccharomyces cerevisiae
Length: 912 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP3.

Description E-value Query
Range
Subject
Range
UBP3 - Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde tran...
UBP3_YEAST - Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
0.0 [1..912] [1..912]
gi|148679673, gi... - gi|74192398|dbj|BAE43006.1| unnamed protein product [Mus musculus], gi|6678493|ref|NP_033488.1| ubiq...
6.0E-84 [120..912] [97..791]
gi|61364925, gi|... - gi|61364925|gb|AAX42626.1| ubiquitin specific protease 10 [synthetic construct], gi|123998177|gb|ABM...
gi|24307889, gi|... - gi|24307889|ref|NP_005144.1| ubiquitin specific protease 10 [Homo sapiens], gi|12653005|gb|AAH00263....
8.0E-78 [150..912] [127..796]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-78 [150..912] [154..823]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMQDANKEE SYSMYPKTSS PPPPTPTNMQ IPIYQAPLQM YGYTQAPYLY PTQIPAYSFN  60
   61 MVNQNQPIYH QSGSPHHLPP QNNINGGSTT NNNNINKKKW HSNGITNNNG SSGNQGANSS 120
  121 GSGMSYNKSH TYHHNYSNNH IPMMASPNSG SNAGMKKQTN SSNGNGSSAT SPSYSSYNSS 180
  181 SQYDLYKFDV TKLKNLKENS SNLIQLPLFI NTTEAEFAAA SVQRYELNMK ALNLNSESLE 240
  241 NSSVEKSSAH HHT

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 14.84
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [254-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSHSIPKHNE EVKTETHGEE EDAHDKKPHA SKDAHELKKK TEVKKEDAKQ DRNEKVIQEP  60
   61 QATVLPVVDK KEPEESVEEN TSKTSSPSPS PPAAKSWSAI ASDAIKSRQA SNKTVSGSMV 120
  121 TKTPISGTTA GVSSTNMAAA TIGKSSSPLL SKQPQKKDKK YVP

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 15.0
Match: 1ldvA
Description: No description for 1ldvA was found.

Predicted Domain #3
Region A:
Residues: [417-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTKGIEPLG SIALRMCFDP DFISYVLRNK DVENKIPVHS IIPRGIINRA NICFMSSVLQ  60
   61 VLLYCKPFID VINVLSTRNT NSR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 9.79588
Match: PF00442
Description: No description for PF00442 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [500-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGTSSCKLLD ACLTMYKQFD KETYEKKFLE NADDAEKTTE SDAKKSSKSK SFQHCATADA  60
   61 VKPDEFYKTL STIPKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [576-812]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLQWGHQED AEEFLTHLLD QLHEELISAI DGLTDNEIQN MLQSINDEQL KVFFIRNLSR  60
   61 YGKAEFIKNA SPRLKELIEK YGVINDDSTE ENGWHEVSGS SKRGKKTKTA AKRTVEIVPS 120
  121 PISKLFGGQF RSVLDIPNNK ESQSITLDPF QTIQLDISDA GVNDLETAFK KFSEYELLPF 180
  181 KSSSGNDVEA KKQTFIDKLP QVLLIQFKRF SFINNVNKDN AMTNYNAYNG RIEKIRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [813-912]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKYGHELII PEESMSSITL KNNTSGIDDR RYKLTGVIYH HGVSSDGGHY TADVYHSEHN  60
   61 KWYRIDDVNI TELEDDDVLK GGEEASDSRT AYILMYQKRN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 24.267606
Match: PF00443
Description: Ubiquitin carboxyl-terminal hydrolase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle