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View Structure Prediction Details

Protein: SCC4
Organism: Saccharomyces cerevisiae
Length: 624 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC4.

Description E-value Query
Range
Subject
Range
gi|50290219, gi|... - gi|50290219|ref|XP_447541.1| hypothetical protein CAGL0I06710g [Candida glabrata CBS138], gi|4952685...
gi|49526851 - gi|49526851|emb|CAG60478.1| unnamed protein product [Candida glabrata]
414.0 [0..9] [616..4]
gi|50308803, gi|... - gi|50308803|ref|XP_454406.1| unnamed protein product [Kluyveromyces lactis], gi|49643541|emb|CAG9949...
gi|49643541 - gi|49643541|emb|CAG99493.1| KLLA0E10121p [Kluyveromyces lactis]
323.0 [0..13] [621..30]
gi|44986083, gi|... - gi|45201229|ref|NP_986799.1| AGR133Cp [Ashbya gossypii ATCC 10895], gi|44986083|gb|AAS54623.1| AGR13...
gi|44986083 - gi|44986083|gb|AAS54623.1| AGR133Cp [Ashbya gossypii ATCC 10895]
305.0 [0..13] [619..48]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLGDKLSI SQVYHLAQEY RDHAYSIANK IGSEEGLKQY YGLMNMSIQM FQLLKTKCTL  60
   61 SVLEDSKVTF EMVELLIQET YNFDLAELYI SSLKERLQTH Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.950 a.47.2 t-snare proteins

Predicted Domain #2
Region A:
Residues: [102-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDTDLVEEIM RCEFLLLHDL PLMRDSKFHY KIALRNCNEL VQYMVNLQDE LYQNWASVFQ  60
   61 YVGVMLCIKL KQHRRVKTSF HGLLSQCREK SQWKWFLNLC YVNYLLNERF PIPEDALQEL 120
  121 RSTELHTVGP ELYAWKLALE MVIQLCKDGN ITDHLNEFKN FFDTNKQSLV T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEGKGCVIKI MPRIALKVEL PMIFHYKELK NILLLLQSVS YIVNCYDEKG NFSRKFLPKV  60
   61 YSTTQKLIKN IAAGGVSMNE LDSRIQTYKS ILEFCEFYKV WEQTLLKGAV VTTESPKLGP 120
  121 SPGYVRLLQA MKVQFEGGGA VEEYTRLAQS GGTSSEVKMI SLLNCYTVQA ARVSRCSGDK 180
  181 QGELVEQCNK VWLQVEKLLQ ETDLQFNPIW ECTVTILWLF SHFEPFSWNP L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [504-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCSDKQRAEY VSKLREFYSS NKFVAGEAVA DNRFKLKKAL LLQILVNYLG GRMLEHDLGE  60
   61 IYAISAKCFD MCRQQGGMRK VQYVIGIWHL MNCTVAMRGK DVALTNAKLE ALVKQITSVK 120
  121 Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle