YRC Public Data Repository - Protein Structure Prediction

Protein:	RTR1
Organism:	Saccharomyces cerevisiae
Length:	226 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTR1.

Description	E-value	Query Range	Subject Range
RTR1_YEAST - RNA polymerase II subunit B1 CTD phosphatase RTR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... gi\|151944857 - gi\|151944857\|gb\|EDN63116.1\| conserved protein [Saccharomyces cerevisiae YJM789] RTR1 - CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif... gi\|207345837 - gi\|207345837\|gb\|EDZ72529.1\| YER139Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190405698 - gi\|190405698\|gb\|EDV08965.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	4.0E-90	[1..226]	[1..226]
CE00290 - status:Confirmed UniProt:P30641 protein_id:CAA78048.1	3.0E-58	[26..215]	[14..215]
gi\|18257341, gi\|... - gi\|21450301\|ref\|NP_659160.1\| RNA polymerase II associated protein 2 [Mus musculus], gi\|18257341\|gb\|A...	4.0E-38	[24..136]	[52..160]
gi\|13376202, gi\|... - gi\|13376202\|ref\|NP_079089.1\| RNA polymerase II associated protein 2 [Homo sapiens], gi\|10435038\|dbj\|...	5.0E-36	[24..136]	[52..160]
SPAC23A1.16c - DUF408 family protein RPAP2_SCHPO - Putative RNA polymerase II subunit B1 CTD phosphatase rtr1 OS=Schizosaccharomyces pombe (strain 972 ...	2.0E-31	[22..148]	[34..155]
gi\|60471883, gi\|... - gi\|60471883\|gb\|EAL69837.1\| hypothetical protein DDB0167475 [Dictyostelium discoideum], gi\|19569876\|g... gi\|60471883, gi\|... - gi\|66820244\|ref\|XP_643755.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60471883\|gb\|EAL...	4.0E-25	[24..135]	[91..200]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIEDIKET ALIPFQKHRQ LSMHEAEVIT LEIIGLLCDS ECKDEKTLKY LGRFLTPDMY  60
   61 QDLVDERNLN KRCGYPLCGK SPERIRDPFS MNDTTKKFLL ENNPYAYLSH YCSKFHFRCS 120
  121 QFYQVQLSDE ALFARTGVHL FE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEQDKHDID FKVTLFEELL REKASEEDIK SLISGLKKLG LNPDSGTTEK DDTELEDDLS  60
   61 KWLAQIKIVE NDNPSILGDF TRED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits