YRC Public Data Repository - Protein Structure Prediction

Protein:	AVT6
Organism:	Saccharomyces cerevisiae
Length:	448 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVT6.

Description	E-value	Query Range	Subject Range
gi\|3342264, gi\|1... - gi\|3342264\|gb\|AAC27557.1\| Na-K-Cl cotransporter [Rattus norvegicus], gi\|13929130\|ref\|NP_113986.1\| so...	2.0E-65	[10..442]	[288..723]
S122_MOUSE, S12A... - Solute carrier family 12 member 2 OS=Mus musculus GN=Slc12a2 PE=1 SV=1, (P55012) Solute carrier fami...	1.0E-64	[10..442]	[290..725]
SLC12A2 - solute carrier family 12 (sodium/potassium/chloride transporters), member 2	2.0E-64	[10..442]	[297..732]
gi\|27807511, gi\|... - gi\|27807511\|ref\|NP_777207.1\| solute carrier family 12 (sodium/potassium/chloride transporters), memb...	1.0E-62	[10..442]	[289..724]
S12A2_SQUAC - Solute carrier family 12 member 2 OS=Squalus acanthias GN=SLC12A2 PE=1 SV=1	3.0E-62	[10..442]	[269..705]
gi\|116116330, gi... - ref\|XP_321556.1\| ENSANGP00000011560 [Anopheles gambiae], gi\|118794513\|ref\|XP_321556.3\| AGAP001557-P... gi\|19572377 - gi\|19572377\|emb\|CAD27923.1\| putative Na-K-Cl symporter [Anopheles gambiae]	9.0E-62	[10..442]	[200..630]
gi\|15216030 - gi\|15216030\|emb\|CAC51425.1\| amino acid permease AAP4 [Vicia faba var. minor]	9.0E-60	[6..447]	[41..473]
gi\|4138679 - gi\|4138679\|emb\|CAA70778.1\| amino acid transporter [Vicia faba]	1.0E-59	[4..446]	[60..500]

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Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASIRSGVL TLLHTACGAG ILAMPYAFKP FGLIPGVIMI VLCGACAMQS LFIQARVAKY  60
   61 VPQGRASFSA LTRLINPNLG IVFDLAIAIK CFGVGVSYMI VVGDLMPQIM SVWTRNAWLL 120
  121 NRNVQISLIM LFFVAPLSFL KKLNSLRYAS MVAISSVAYL CVLVLLHYVA PSDEILRLKG 180
  181 RISYLLPPQS HDLNVLNTLP IFVFAYTCHH NMFSIINEQR SSRFEHVMKI PLIAISLALI 240
  241 LYIAIGCAGY LTFGDNIIGN IIMLYPQAVS STIGRIAIVL LVMLAFPLQC HPARASIHQI 300
  301 LQHFAEENVS ISATSADEPT VATESSPLIR DSSLDLNEVI EEESIYQPKE TPLRGKSFIV 360
  361 ITCSILVASY LVAISVSSLA RVLAIVGATG STSISFILPG LFGYKLIGTE HKTAVPLTTK 420
  421 IFKYTGLLLF IWGLIIMITC LTAALKLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	138.60206
Match:	PF01490
Description:	Transmembrane amino acid transporter protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits