YRC Public Data Repository - Protein Structure Prediction

Protein:	VTC1
Organism:	Saccharomyces cerevisiae
Length:	129 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTC1.

Description	E-value	Query Range	Subject Range
nrf1 - GTPase regulator Nrf1 VTC1_SCHPO - Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2...	181.0	[0..1]	[122..1]
gi\|49647131, gi\|... - gi\|50547591\|ref\|XP_501265.1\| hypothetical protein [Yarrowia lipolytica], gi\|49647131\|emb\|CAG83518.1\|...	171.0	[0..1]	[120..23]
gi\|111066237, gi... - gi\|169603914\|ref\|XP_001795378.1\| hypothetical protein SNOG_04966 [Phaeosphaeria nodorum SN15], gi\|11...	165.0	[0..1]	[120..1]
gi\|50305177, gi\|... - gi\|50305177\|ref\|XP_452547.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641680\|emb\|CAH0139... gi\|49641680 - gi\|49641680\|emb\|CAH01398.1\| KLLA0C07799p [Kluyveromyces lactis]	162.0	[0..3]	[122..2]
gi\|114189008, gi... - gi\|115402171\|ref\|XP_001217162.1\| vacuolar transporter chaperone 1 [Aspergillus terreus NIH2624], gi\|...	162.0	[0..1]	[121..1]
gi\|159131077 - gi\|159131077\|gb\|EDP56190.1\| vacuolar transporter chaperon Vtc1, putative [Aspergillus fumigatus A116... gi\|66849956, gi\|... - gi\|70995110\|ref\|XP_752321.1\| vacuolar transporter chaperon Vtc1 [Aspergillus fumigatus Af293], gi\|66...	162.0	[0..1]	[121..1]
gi\|49529209 - gi\|49529209\|emb\|CAG62875.1\| unnamed protein product [Candida glabrata] gi\|50294968, gi\|... - gi\|50294968\|ref\|XP_449895.1\| hypothetical protein CAGL0M12705g [Candida glabrata CBS138], gi\|4952920...	160.0	[0..1]	[124..1]
gi\|49086928, gi\|... - gi\|67521754\|ref\|XP_658938.1\| hypothetical protein AN1334.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	159.0	[0..1]	[120..1]
VTC3 - Subunit of the vacuolar transporter chaperone (VTC) complex involved in membrane trafficking, vacuol... VTC3_YEAST - Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC3 PE...	159.0	[0..14]	[121..688]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAPLLQRT PGKKIALPTR VEPKVFFANE RTFLSWLNFT VMLGGLGVGL LNFGDKIGRV  60
   61 SAGLFTFVAM GTMIYALVTY HWRAAAIRRR GSGPYDDRLG PTLLCFFLLV AVIINFILRL 120
  121 KYNDANTKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.983	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits