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View Structure Prediction Details

Protein: RRT13
Organism: Saccharomyces cerevisiae
Length: 185 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT13.

Description E-value Query
Range
Subject
Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
5.0E-55 [2..185] [1149..1356]
HETE1_PODAS - Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1
1.0E-50 [3..183] [1001..1205]
gi|72160460, gi|... - gi|72160460|ref|YP_288117.1| WD-40 repeat-containing tyrosine protein kinase [Thermobifida fusca YX]...
PKWA_THECU - Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1
3.0E-50 [4..184] [494..697]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCLYILSGH TDRIYSTIYD HERKRCISAS MDTTIRIWDL ENIRNNGECS YATNSASPCA  60
   61 KILGAMYTLR GHRALVGLLG LSDKFLVSAS VDGSIRCWDA NTYFLKHFFD HTQLNTITAL 120
  121 HVSDEVLVSG SEGLLNIYDL NSGLLVRSDT LSGADNVWNV SFKDNTLVAA VERDKRNLLE 180
  181 ILDFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 86.70927
Match: 1erjA_
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle