YRC Public Data Repository - Protein Structure Prediction

Protein:	HOR2
Organism:	Saccharomyces cerevisiae
Length:	250 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOR2.

Description	E-value	Query Range	Subject Range
gi\|207345953 - gi\|207345953\|gb\|EDZ72600.1\| YER062Cp-like protein [Saccharomyces cerevisiae AWRI1631] HOR2 - One of two redundant DL-glycerol-3-phosphatases (RHR2/GPP1 encodes the other) involved in glycerol b... GPP2_YEAST - Glycerol-1-phosphate phosphohydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	8.0E-46	[1..250]	[1..250]
gi\|25303791 - pir\|\|D97005 probable phosphatase [imported] - Clostridium acetobutylicum gi\|15023749, gi\|... - gi\|15894142\|ref\|NP_347491.1\| phosphatase [Clostridium acetobutylicum ATCC 824], gi\|15023749\|gb\|AAK78...	3.0E-38	[12..226]	[1..212]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	3.0E-36	[8..225]	[1..224]
SGGP_ARATH - Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp OS=Arabidopsis thaliana GN=SGPP ...	6.0E-36	[4..231]	[14..241]
gi\|126520826, gi... - gi\|153821629\|ref\|ZP_01974296.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|153829003, gi... - gi\|153829003\|ref\|ZP_01981670.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|227811728, gi... - gi\|227811728\|ref\|YP_002811738.1\| CbbY family protein [Vibrio cholerae M66-2], gi\|227010870\|gb\|ACP070... gi\|227119283, gi... - gi\|227119283\|ref\|YP_002821178.1\| CbbY family protein [Vibrio cholerae O395], gi\|227014733\|gb\|ACP1094... gi\|121726959, gi... - gi\|121726959\|ref\|ZP_01680155.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|121586870, gi... - gi\|121586870\|ref\|ZP_01676651.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|153221840, gi... - gi\|153221840\|ref\|ZP_01952705.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|9657489, gi\|1... - gi\|9657489\|gb\|AAF96016.1\| CbbY family protein [Vibrio cholerae O1 biovar eltor str. N16961], gi\|1560... gi\|124116239, gi... - gi\|153212861\|ref\|ZP_01948478.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|11354451 - pir\|\|A82498 CbbY family protein VCA0102 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|126511761, gi... - gi\|153817719\|ref\|ZP_01970386.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|254850367, gi... - gi\|254850367\|ref\|ZP_05239717.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole...	2.0E-34	[9..225]	[3..215]
gi\|17130073, gi\|... - gi\|17228223\|ref\|NP_484771.1\| hypothetical protein alr0728 [Nostoc sp. PCC 7120], gi\|17130073\|dbj\|BAB... gi\|25532815 - pir\|\|AF1897 hypothetical protein alr0728 [imported] - Nostoc sp. (strain PCC 7120)	5.0E-34	[12..239]	[2..225]
GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida (strain Pm70) GN=gph PE=3 SV=1 GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida GN=gph PE=3 SV=1	7.0E-34	[11..225]	[3..223]

Back

Predicted Domain #1

Region A:
Residues: [1-27]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLTTKPLSL KVNAALFDVD GTIIISQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [86-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGEKSIEVPG AVKLCNALNA LPKEKWAVAT SGTRDMAQKW FEHLGIRRPK YFITANDVKQ  60
   61 GKPHPEPYLK GRNGLGYPIN EQDPSKSKVV VFEDAPAGIA AGKAAGCKII GIATTFDLDF 120
  121 LKEKGCDIIV KNHESIRVGG YNAETDEVEF IFDDYLYAKD DLLKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1qq5A_
Description:	L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [28-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAIAAFWRDF GKDKPYFDAE HVIQVSHGWR TFDAIAKFAP DFANEEYVNK LEAEIPVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1qq5A_
Description:	L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits