YRC Public Data Repository - Protein Structure Prediction

Protein:	PET117
Organism:	Saccharomyces cerevisiae
Length:	107 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET117.

Description	E-value	Query Range	Subject Range
PET117 - Protein required for assembly of cytochrome c oxidase PT117_YEAST - Protein PET117, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET117 PE=...	1.0E-46	[1..107]	[1..107]
CG11562-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11562 (CG11562, FBgn0031247). It is a prote... gi\|220948554, gi... - gi\|220957874\|gb\|ACL91480.1\| CG11562-PA [synthetic construct], gi\|220948554\|gb\|ACL86820.1\| CG11562-PA...	0.007	[1..66]	[1..67]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRASKITFA ASCLITAATV VGVHYVQEME RETLHQGPIK DAKRVEEKRL RKTNGVASLD  60
   61 PTKERKRYFN MSEHEEQKEL RKKYETMQPL SGEVVTKDGE VVKESKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits