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View Structure Prediction Details

Protein: CAJ1
Organism: Saccharomyces cerevisiae
Length: 391 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAJ1.

Description E-value Query
Range
Subject
Range
gi|8886993, gi|1... - gi|8886993|gb|AAF80653.1|AC012190_9 Similar to a dnaJ-like protein from Arabidopsis thaliana gb|Y119...
322.0 [0..1] [391..1]
gi|57340266 - gi|57340266|gb|AAW50121.1| DnaJ-like protein [Brassica juncea]
312.0 [0..1] [390..1]
gi|113631781, gi... - gi|222641844|gb|EEE69976.1| hypothetical protein OsJ_29869 [Oryza sativa Japonica Group], gi|2157405...
gi|218202387 - gi|218202387|gb|EEC84814.1| hypothetical protein OsI_31884 [Oryza sativa Indica Group]
292.0 [0..1] [367..1]
YAY1_SCHPO - Uncharacterized J domain-containing protein C4H3.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...
SPAC4H3.01 - DNAJ domain protein Caj1 /Djp1 type
291.0 [0..4] [391..6]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKETEYYDI LGIKPEATPT EIKKAYRRKA METHPDKHPD DPDAQAKFQA VGEAYQVLSD  60
   61 PGLRSKYDQF GKEDAVPQQG FEDASEYFTA IFGGDGFKDW IGEFSLFKEL NEATEMFGKE 120
  121 DEEGTAATET EKADESTDGG MVKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 137.69897
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [145-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTNKAESLKK DKLSKEQREK LMEMEKKRRE DMMKQVDELA EKLNEKISRY LIAVKSNNLE  60
   61 EFTRKLDQEI EDLKLESFGL ELLYLLARVY KTKANNFIMS KKTYGISKIF TGTRDNARSV 120
  121 KSAYNLLSTG LEAQKAMEKM SEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1c3gA
Description: Heat shock protein 40 Sis1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [288-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTDELDQYER AKFESTMAGK ALGVMWAMSK FELERKLKDV CNKILNDKKV PSKERIAKAK  60
   61 AMLFIAHKFA SARRSPEEAE EARVFEELIL GEQEKEHKKH TVAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.944 N/A N/A a.24.9 alpha-catenin/vinculin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle