YRC Public Data Repository - Protein Structure Prediction

Protein:	ERG28
Organism:	Saccharomyces cerevisiae
Length:	148 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERG28.

Description	E-value	Query Range	Subject Range
gi\|73964320 - gi\|73964320\|ref\|XP_854777.1\| PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Cani...	189.0	[0..22]	[137..260]
gi\|49527132, gi\|... - gi\|50290777\|ref\|XP_447821.1\| unnamed protein product [Candida glabrata], gi\|49527132\|emb\|CAG60770.1\|... gi\|49527132 - gi\|49527132\|emb\|CAG60770.1\| unnamed protein product [Candida glabrata]	171.0	[0..1]	[148..1]
erg28 - Erg28 protein ERG28_SCHPO - Ergosterol biosynthetic protein 28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg28 P...	170.0	[0..15]	[147..5]
gi\|6841226 - gi\|6841226\|gb\|AAF28966.1\|AF161406_1 HSPC288 [Homo sapiens]	169.0	[0..22]	[137..44]
gi\|149025217, gi... - gi\|62651081\|ref\|XP_216756.3\| PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Ratt... ERG28_MOUSE - Probable ergosterol biosynthetic protein 28 OS=Mus musculus GN=ORF11 PE=2 SV=1	163.0	[0..22]	[137..7]
gi\|49643268 - gi\|49643268\|emb\|CAG99220.1\| KLLA0E04203p [Kluyveromyces lactis] gi\|50308265, gi\|... - gi\|50308265\|ref\|XP_454133.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643268\|emb\|CAG9922...	156.0	[0..1]	[146..1]
gi\|78369372, gi\|... - gi\|78369372\|ref\|NP_001030500.1\| hypothetical protein LOC539248 [Bos taurus], gi\|74354117\|gb\|AAI02608...	156.0	[0..22]	[137..7]
gi\|18101633 - gi\|18101633\|gb\|AAL14202.2\| transmembrane domain-containing protein [Hypocrea jecorina]	155.0	[0..20]	[144..12]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLQDVITT TKTTLAAMPK GYLPKWLLFI SIVSVFNSIQ TYVSGLELTR KVYERKPTET  60
   61 THLSARTFGT WTFISCVIRF YGAMYLNEPH IFELVFMSYM VALFHFGSEL LIFRTCKLGK 120
  121 GFMGPLVVST TSLVWMYKQR EYYTGVAW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.920819
Match:	PF03694.4
Description:	No description for PF03694.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.985	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits