YRC Public Data Repository - Protein Structure Prediction

Protein:	KRE29
Organism:	Saccharomyces cerevisiae
Length:	464 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRE29.

Description	E-value	Query Range	Subject Range
KRE29 - Essential subunit of the Mms21-Smc5-Smc6 complex, required for growth and DNA repair; heterozygous m... KRE29_YEAST - DNA repair protein KRE29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRE29 PE=1 SV=1	0.0	[1..464]	[1..464]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVNSSPNE EFETVPDSQI SGFDSPLIPT SVGSYFRDDD DDEKVHPNFI SDPENDSLNS  60
   61 DEEFSSLENS DLNLSGAKAE SGDDFDPILK RTIISKRKAP SNNEDEEIVK TPRKLVNYVP 120
  121 LKIFNLGDSF DDTITTTVAK LQDLKKEILD SPRSNKSIVI TSNTVAKSEL QKSIKFSGSI 180
  181 PEIYLDVVTK ETISDKYKDW HFISKNCHYE QLMDLEMKDT AYSFLFGSSR SQGKVPEFVH 240
  241 LKCPSITNLL VLFGVNQEKC NSLKINYEKK ENSRYDNLCT IFPVNKMLKF LMYFYSDDDN 300
  301 DDVREFFLKA FICLILDRKV FNAMESDHRL CFKVLELFNE AHFINSYFEI VDKNDFFLHY 360
  361 RLLQIFPHLQ SALLRRRFSE KQGRTETIQQ NIIKEFNEFF DCKNYKNLLY FILTMYGSKF 420
  421 IPFGPKCQVT EYFKDCILDI SNETTNDVEI SILKGILNLF SKIR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [234-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPEFVHLKC PSITNLLVLF GVNQEKCNSL KINYEKKENS RYDNLCTIFP VNKMLKFLMY  60
   61 FYSDDDNDDV REFFLKAFIC LILDRKVFNA MESDHRLCFK VLELFNEAHF INSYFEIVDK 120
  121 NDFFLHYRLL QIFPHLQSAL LRRRFSEKQG RTETIQQNII KEFNEFFDCK NYKNLLYFIL 180
  181 TMYGSKFIPF GPKCQVTEYF KDCILDISNE TTNDVEISIL KGILNLFSKI R