YRC Public Data Repository - Protein Structure Prediction

Protein:	CHO1
Organism:	Saccharomyces cerevisiae
Length:	276 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHO1.

Description	E-value	Query Range	Subject Range
PSS_YEAST - CDP-diacylglycerol--serine O-phosphatidyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508... CHO1 - Phosphatidylserine synthase, functions in phospholipid biosynthesis; catalyzes the reaction CDP-diac...	5.0E-70	[1..276]	[1..276]
SPCC1442.12 - CDP-diacylglycerol--serine O-phosphatidyltransferase YQ7C_SCHPO - Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein C1442.12 OS=Schizosacchar...	2.0E-37	[44..275]	[3..239]
gi\|4099923 - gi\|4099923\|gb\|AAD10497.1\| phosphatidylserine synthase [Triticum aestivum]	4.0E-35	[41..276]	[1..239]
gi\|15156089, gi\|... - gi\|15888405\|ref\|NP_354086.1\| hypothetical protein AGR_C_1962 [Agrobacterium tumefaciens str. C58], g... gi\|25288767 - pir\|\|F97489 phosphatidylserine synthase (AF247564) [imported] - Agrobacterium tumefaciens (strain C5...	4.0E-33	[53..270]	[4..213]
gi\|9837105, gi\|1... - gi\|9837105\|gb\|AAG00422.1\|AF247564_3 phosphatidylserine synthase [Sinorhizobium meliloti], gi\|1507405... gi\|15964875 - gi\|15964875\|ref\|NP_385228.1\| putative CDP-diacylglycerol--serine O-phosphatidyltransferase transmemb...	6.0E-31	[67..270]	[23..218]
gi\|17429092 - gi\|17429092\|emb\|CAD15780.1\| putative cdp-diacylglycerol--serine o-phosphatidyltransferase protein [R... gi\|17546792 - gi\|17546792\|ref\|NP_520194.1\| putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein [...	1.0E-29	[42..275]	[5..225]
gi\|15488440 - gi\|15488440\|gb\|AAL01116.1\| phosphatidylserine synthase [Agrobacterium sp. 31749]	3.0E-28	[68..270]	[3..197]
gi\|25529274 - pir\|\|AD3438 CDPdiacylglycerol-serine O-phosphatidyltransferase (EC 2.7.8.8) [imported] - Brucella me... gi\|17987773, gi\|... - gi\|17987773\|ref\|NP_540407.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella melitens...	2.0E-27	[65..270]	[25..222]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESDEDFAP QEFPHTDTDV IVNEHRDEND GYASDEVGGT LSRRASSIFS INTTPLAPPN  60
   61 ATDIQKFTSD EHHFSMMRNL HMADYITMLN GFSGFYSIVS CLRFTLTGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.271	a.1.1	Globin-like
View	Download	0.289	a.118.1	ARM repeat
View	Download	0.351	a.24.17	Group V grass pollen allergen

Predicted Domain #2

Region A:
Residues: [110-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHYVQRAHFF ILLGMCFDFL DGRVARLRNR SSLMGQELDS LADLVSFGVA PAAIAFAIGF  60
   61 QTTFDVMILS FFVLCGLARL ARFNVTVAQL PKDSSTGKSK YFEGLPMPTT LALVLGMAYC 120
  121 VRKGLIFDNI PFGIFREDQI LEFHPIILVF FIHGCGMISK SLKIPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.136677
Match:	PF01066
Description:	CDP-alcohol phosphatidyltransferase

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits