YRC Public Data Repository - Protein Structure Prediction

Protein:	YER010C
Organism:	Saccharomyces cerevisiae
Length:	234 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YER010C.

Description	E-value	Query Range	Subject Range
RRAAH_YEAST - 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ... YER010C - Protein of unknown function, forms a ring-shaped homotrimer; has similarity to members of the prokar... gi\|190405571 - gi\|190405571\|gb\|EDV08838.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207346037 - gi\|207346037\|gb\|EDZ72655.1\| YER010Cp-like protein [Saccharomyces cerevisiae AWRI1631]	2.0E-70	[1..234]	[1..234]
DLPA_LEGPH - Protein DlpA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM ... DLPA_LEGPN - (Q48806) Protein dlpA	2.0E-46	[3..225]	[395..599]
gi\|167425923, gi... - gi\|167425923\|ref\|ZP_02317676.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|167418817, gi... - gi\|167418817\|ref\|ZP_02310570.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|170026328, gi... - gi\|170026328\|ref\|YP_001722833.1\| hypothetical protein YPK_4121 [Yersinia pseudotuberculosis YPIII], ... gi\|167468404 - gi\|167468404\|ref\|ZP_02333108.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|186893426, gi... - gi\|186893426\|ref\|YP_001870538.1\| hypothetical protein YPTS_0082 [Yersinia pseudotuberculosis PB1/+],... gi\|22123976, gi\|... - gi\|22123976\|ref\|NP_667399.1\| hypothetical protein y0055 [Yersinia pestis KIM], gi\|21956715\|gb\|AAM836... gi\|25509516 - pir\|\|AB0011 probable transferase [imported] - Yersinia pestis (strain CO92) gi\|150260856, gi... - gi\|150260856\|ref\|ZP_01917584.1\| possible transferase [Yersinia pestis CA88-4125], gi\|149290264\|gb\|ED... gi\|115345912, gi... - gi\|218927301\|ref\|YP_002345176.1\| hypothetical protein YPO0082 [Yersinia pestis CO92], gi\|16120433\|re... gi\|51594436, gi\|... - gi\|51594436\|ref\|YP_068627.1\| hypothetical protein YPTB0078 [Yersinia pseudotuberculosis IP 32953], g... gi\|229706645, gi... - gi\|229836197\|ref\|ZP_04456365.1\| possible transferase [Yersinia pestis Pestoides A], gi\|229706645\|gb\|... gi\|162353916, gi... - gi\|77633903\|ref\|ZP_00796016.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis Angol... gi\|165936164, gi... - gi\|89103454\|ref\|ZP_01176031.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis biova... gi\|165989611, gi... - gi\|166011465\|ref\|ZP_02232363.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|229839933, gi... - gi\|229839933\|ref\|ZP_04460092.1\| possible transferase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|117671930, gi... - gi\|77630841\|ref\|ZP_00793427.1\| COG0684: Demethylmenaquinone methyltransferase [Yersinia pseudotuberc... gi\|108781363, gi... - gi\|108809450\|ref\|YP_653366.1\| hypothetical protein YPA_3459 [Yersinia pestis Antiqua], gi\|108781363\|... gi\|165926105, gi... - gi\|165926105\|ref\|ZP_02221937.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|229842015, gi... - gi\|229842015\|ref\|ZP_04462170.1\| possible transferase [Yersinia pestis biovar Orientalis str. India 1... gi\|108813926, gi... - gi\|229904456\|ref\|ZP_04519567.1\| possible transferase [Yersinia pestis Nepal516], gi\|229678574\|gb\|EEO... gi\|167399092, gi... - gi\|167399092\|ref\|ZP_02304616.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... gi\|166205055, gi... - gi\|166213653\|ref\|ZP_02239688.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase... Q66GA4\|Q66GA4_YERPS - Possible transferase - Yersinia pseudotuberculosis gi\|145601063, gi... - gi\|145601063\|ref\|YP_001165139.1\| hypothetical protein YPDSF_3821 [Yersinia pestis Pestoides F], gi\|1...	3.0E-43	[1..211]	[19..209]
gi\|17431705 - gi\|17431705\|emb\|CAD18382.1\| putative dimethylmenaquinone methyltransferase; protein [Ralstonia solan... gi\|17549452 - gi\|17549452\|ref\|NP_522792.1\| putative transferase protein [Ralstonia solanacearum GMI1000]	5.0E-42	[4..216]	[11..197]
gi\|15074699 - gi\|15074699\|emb\|CAC46344.1\| Demethylmenaquinone methyltransferase [Sinorhizobium meliloti 1021] gi\|15965518 - gi\|15965518\|ref\|NP_385871.1\| hypothetical protein SMc00502 [Sinorhizobium meliloti 1021]	2.0E-41	[2..220]	[14..218]
RRAAH_BACHD - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Bacillus halodurans (strain ATCC BAA-125 / DS... YJ38_BACHD, Y193... - (Q9KBI9) Hypothetical protein BH1938, Uncharacterized protein BH1938 OS=Bacillus halodurans GN=BH193...	3.0E-41	[4..222]	[9..201]
gi\|7573254 - gi\|7573254\|emb\|CAB87566.1\| FldZ protein [Sphingomonas sp. LB126]	8.0E-41	[1..193]	[14..182]
Y644_METJA - Uncharacterized protein MJ0644 OS=Methanocaldococcus jannaschii GN=MJ0644 PE=4 SV=1 Y644_METJA - Uncharacterized protein MJ0644 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-...	1.0E-39	[7..215]	[16..203]
gi\|146275623, gi... - ref\|ZP_00302744.1\| COG0684: Demethylmenaquinone methyltransferase [Novosphingobium aromaticivorans D... gi\|3378387, gi\|1... - gi\|3378387\|gb\|AAD03970.1\| unknown [Novosphingobium aromaticivorans], pir\|\|T31246 hypothetical protei...	2.0E-39	[4..219]	[7..207]
HMGA_PSEOC - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase OS=Pseudomonas ...	4.0E-39	[2..212]	[17..198]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQKLQRF STCDISDGLL NVYNIPTGGY FPNLTAISPP QNSSIVGTAY TVLFAPIDDP  60
   61 RPAVNYIDSV PPNSILVLAL EPHLQSQFHP FIKITQAMYG GLMSTRAQYL KSNGTVVFGR 120
  121 IRDVDEHRTL NHPVFAYGVG SCAPKAVVKA VGTNVQLKIL TSDGVTQTIC PGDYIAGDNN 180
  181 GIVRIPVQET DISKLVTYIE KSIEVDLLVS EDIKNGIPAK QAQNDRRSVL KKYI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.09691
Match:	PF03737
Description:	Demethylmenaquinone methyltransferase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits