YRC Public Data Repository - Protein Structure Prediction

Protein:	TMA20
Organism:	Saccharomyces cerevisiae
Length:	181 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA20.

Description	E-value	Query Range	Subject Range
TMA20 - Protein of unknown function that associates with ribosomes and has a putative RNA binding domain; in... gi\|151944715 - gi\|151944715\|gb\|EDN62974.1\| translation machinery associated protein [Saccharomyces cerevisiae YJM78... TMA20_YEAST - Translation machinery-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	4.0E-50	[1..181]	[1..181]
ENSCJAT00000004957 - null MCTS1_BOVIN - Malignant T-cell-amplified sequence 1 OS=Bos taurus GN=MCTS1 PE=2 SV=1 gi\|74008257 - gi\|74008257\|ref\|XP_864674.1\| PREDICTED: similar to malignant T cell amplified sequence 1 isoform 3 [... gi\|114690028 - gi\|114690028\|ref\|XP_001137540.1\| PREDICTED: malignant T cell amplified sequence 1 isoform 3 [Pan tro... MCTS1 - malignant T cell amplified sequence 1	7.0E-50	[1..179]	[1..178]
gi\|149060052 - gi\|149060052\|gb\|EDM10868.1\| malignant T cell amplified sequence 1, isoform CRA_a [Rattus norvegicus] MCTS1_MOUSE - Malignant T-cell-amplified sequence 1 OS=Mus musculus GN=Mcts1 PE=1 SV=1	1.0E-49	[1..179]	[1..178]
gi\|15217434, gi\|... - gi\|23197596\|gb\|AAN15325.1\| unknown protein [Arabidopsis thaliana], gi\|22135954\|gb\|AAM91559.1\| unknow...	3.0E-47	[1..179]	[1..178]
gi\|220954314, gi... - gi\|220954314\|gb\|ACL89700.1\| CG5941-PA [synthetic construct], gi\|220944434\|gb\|ACL84760.1\| CG5941-PA [... FBpp0293887, CG5... - This gene is referred to in FlyBase by the symbol Dmel\CG5941 (CG5941, FBgn0029833). It is a protein...	3.0E-44	[1..179]	[1..179]
SPBC31F10.12 - RNA-binding protein Tma20 gi\|19113366 - gi\|19113366\|ref\|NP_596574.1\| hypothetical protein SPBC31F10.12 [Schizosaccharomyces pombe 972h-]	3.0E-41	[6..181]	[10..184]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKFTREDV HSRSKVKSSI QRTLKAKLVK QYPKIEDVID ELIPKKSQIE LIKCEDKIQL  60
   61 YSVDGEVLFF QKFDELIPSL KLVHKFPEAY PTVQVDRGAI KFVLSGANIM CPGLTSAGAD 120
  121 LPPAPGYEKG TIVVINAENK ENALAIGELM MGTEEIKSVN KGHSIELIHH LGDPLWNFSV 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1it7A_
Description:	Archaeosine tRNA-guanine transglycosylase, C3 domain; Archaeosine tRNA-guanine transglycosylase, N-terminal domain; Archaeosine tRNA-guanine transglycosylase, C2 domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits