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View Structure Prediction Details

Protein: YEL076C
Organism: Saccharomyces cerevisiae
Length: 216 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEL076C.

Description E-value Query
Range
Subject
Range
YRF1-8, YRF1-5, ... - One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)...
YRF18_YEAST, YRF... - Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...
391.0 [0..2] [187..218]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQASLPGEKK VDTERLKRDL CPRKPIEIKY FSQICNDMMN KKDRLGDILH IILRACALNF  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.766 N/A N/A a.4.1 Homeodomain-like
View Download 0.765 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.658 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.595 N/A N/A a.4.1 Homeodomain-like
View Download 0.538 N/A N/A a.230.1 Description not found.

Predicted Domain #2
Region A:
Residues: [61-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAGPRGGAGD EEDRSITNEE PIIPSVDEHG LKVCKLRSPN TPRRLRKTLD AVKALLVSSC  60
   61 ACTARDLDIF DDNNGVAMWK WIKILYHEVA QETTLKDSYR ITLVPSSDGI SVCGKLWGEL 120
  121 NNCFHMPASF CVIEKFCSEN RSEELTSIWK TILFFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle