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View Structure Prediction Details

Protein: RAD23
Organism: Saccharomyces cerevisiae
Length: 398 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD23.

Description E-value Query
Range
Subject
Range
gi|347495, gi|42... - gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae], gi|4261672|gb|AAD13972.1|S65964_1111 Unkn...
7.0E-96 [1..398] [1..398]
gi|17104777, gi|... - gi|22330746|ref|NP_565216.2| RAD23; damaged DNA binding [Arabidopsis thaliana], gi|17104777|gb|AAL34...
8.0E-88 [2..398] [1..362]
gi|5640111 - gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
1.0E-86 [2..395] [1..383]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
6.0E-80 [2..395] [1..377]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLTFKNFK KEKVPLDLEP SNTILETKTK LAQSISCEES QIKLIYSGKV LQDSKTVSEC  60
   61 GLKDGDQVVF MVSQKKSTKT KVTEPPIAPE SATTPGRENS TEASPSTD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.519517
Match: 1aarA_
Description: Ubiquitin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 3.35791544110308 bayes_pls_golite062009
hydrolase activity 2.77871378503369 bayes_pls_golite062009
small conjugating protein ligase activity 2.06714283858345 bayes_pls_golite062009
protein binding 1.76858817153382 bayes_pls_golite062009
ubiquitin-protein ligase activity 1.48147454986498 bayes_pls_golite062009
transcription regulator activity 1.42747465816672 bayes_pls_golite062009
nucleic acid binding 1.32707653701567 bayes_pls_golite062009
DNA binding 1.22622447288034 bayes_pls_golite062009
acid-amino acid ligase activity 1.0818414663245 bayes_pls_golite062009
structure-specific DNA binding 0.570143717979967 bayes_pls_golite062009
cytoskeletal protein binding 0.366426020658587 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.364036714119806 bayes_pls_golite062009
single-stranded DNA binding 0.249928925871521 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [109-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASAAPAATAP EGSQPQEEQT ATTERTESAS TPGFVVGTER NETIERIMEM GYQREEVERA  60
   61 LRAAFNNPDR AVEYLLMGIP ENLRQPEPQQ QTAAAAEQPS TAATTAEQPA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.09691
Match: 1ifyA_
Description: DNA repair protein Hhr23a
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [219-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDLFAQAAQ GGNASSGALG TTGGATDAAQ GGPPGSIGLT VEDLLSLRQV VSGNPEALAP  60
   61 LLENISARYP QLREHIMANP EVFVSMLLEA VGDNMQDVME GADDMVEGED IEVTGEAAAA 120
  121 GLGQGEG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [346-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGSFQVDYTP EDDQAISRLC ELGFERDLVI QVYFACDKNE EAAANILFSD HAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.39794
Match: 1f4iA_
Description: DNA repair protein Hhr23a
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle