YRC Public Data Repository - Protein Structure Prediction

Protein:	YEA6
Organism:	Saccharomyces cerevisiae
Length:	335 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEA6.

Description	E-value	Query Range	Subject Range
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	6.0E-84	[33..330]	[3..298]
SLC25A31 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 gi\|117645348 - gi\|117645348\|emb\|CAL38140.1\| hypothetical protein [synthetic construct] HGNC:25319\|MIM:6... - carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	6.0E-84	[27..331]	[9..309]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	9.0E-83	[33..329]	[3..297]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-82	[33..329]	[3..297]
gi\|4115767, gi\|4... - gi\|4115767\|dbj\|BAA36513.1\| ADP/ATP translocase [Rana rugosa], gi\|4115765\|dbj\|BAA36512.1\| ADP/ATP tra...	2.0E-82	[36..330]	[6..298]

Back

Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNGDNKTTL ENSKNASLAN GNYAIPTKLN RLKKNADPRV AAISGALSGA LSAMLVCPFD  60
   61 VAKTRLQAQG LQNMTHQSQH YKGFFGTFAT IFKDEGAAGL YKGLQPTVLG YIPTLMIYFS 120
  121 VYDFCRKYSV DIFPHSPFLS NASSAITAGA ISTVATNPIW VVKTRLMLQT GIGKYSTHYK 180
  181 GTIDTFRKII QQEGAKALYA GLVPALLGML NVAIQFPLYE NLKIRFGYSE STDVSTDVTS 240
  241 SNFQKLILAS MLSKMVASTV TYPHEILRTR MQLKSDLPNT VQRHLLPLIK ITYRQEGFAG 300
  301 FYSGFATNLV RTVPAAVVTL VSFEYSKKYL TTFFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.06
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits