| Protein: | VAB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 282 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAB2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..282] | [1..282] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MVADLTKGIL KWKSRIEFDA VGSSSYYEEL KGLPPLASHK KLTQAAIFNS TKYELLQVKK 60
61 DILSIYEVVS RDIDEERNQM QQIELQLKKS LKKVEHSYKN VLKQRASTNC INGNDRLLAN 120
121 AEKKIGSLNE EL
|
|
Region B: Residues: [177-207] |
1 11 21 31 41 51
| | | | | |
1 LHKSCPKSII ATSEASIHEN ASPSPLLEHD E
|
| Detection Method: |  |
| Confidence: | 7.03 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [133-176] |
1 11 21 31 41 51
| | | | | |
1 ACVNDIVSDI VNNLTALNAN LPKKAQLLKD DSINVAHYPL LFDF
|
| Detection Method: | |
| Confidence: | 7.03 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [208-282] |
1 11 21 31 41 51
| | | | | |
1 LPAESINSFY GENELQSDSL APLQTHDDNI SSCKKILPPK FNTTSGPSIE TNFENISADG 60
61 LTYTKCSLKN SISLT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.541 | 0.833 | protein binding | b.1.2 | Fibronectin type III |
