YRC Public Data Repository - Protein Structure Prediction

Protein:	IRC4
Organism:	Saccharomyces cerevisiae
Length:	179 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IRC4.

Description	E-value	Query Range	Subject Range
gi\|15602497, gi\|... - gi\|15602497\|ref\|NP_245569.1\| hypothetical protein PM0632 [Pasteurella multocida subsp. multocida str...	5.0E-59	[1..166]	[1..169]
gi\|116517217, gi... - gi\|116517217\|ref\|YP_816312.1\| hypothetical protein SPD_0829 [Streptococcus pneumoniae D39], gi\|11607... gi\|25335042 - pir\|\|F95108 conserved hypothetical protein SP0939 [imported] - Streptococcus pneumoniae (strain TIGR... gi\|225854444, gi... - gi\|225854444\|ref\|YP_002735956.1\| hypothetical protein SPJ_0878 [Streptococcus pneumoniae JJA], gi\|22... gi\|225725153, gi... - gi\|225856601\|ref\|YP_002738112.1\| hypothetical protein SPP_0945 [Streptococcus pneumoniae P1031], gi\|... gi\|14972415, gi\|... - gi\|66877165\|ref\|ZP_00402800.1\| COG4283: Uncharacterized conserved protein [Streptococcus pneumoniae ... gi\|183571396, gi... - gi\|183571396\|gb\|EDT91924.1\| conserved hypothetical protein [Streptococcus pneumoniae SP195], gi\|1684... gi\|149019527, gi... - gi\|149019527\|ref\|ZP_01834846.1\| hypothetical protein CGSSp23BS72_02973 [Streptococcus pneumoniae SP2... gi\|168483008, gi... - gi\|172043484\|gb\|EDT51530.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00], gi... gi\|147764900, gi... - gi\|149010419\|ref\|ZP_01831790.1\| hypothetical protein CGSSp19BS75_03672 [Streptococcus pneumoniae SP1... gi\|147928381, gi... - gi\|148992929\|ref\|ZP_01822548.1\| hypothetical protein CGSSp9BS68_07637 [Streptococcus pneumoniae SP9-... gi\|168491026, gi... - gi\|183574546\|gb\|EDT95074.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04], gi...	1.0E-58	[1..168]	[1..171]
gi\|25335044 - pir\|\|G97976 conserved hypothetical protein spr0839 [imported] - Streptococcus pneumoniae (strain R6) gi\|15458441, gi\|... - gi\|15902883\|ref\|NP_358433.1\| hypothetical protein spr0839 [Streptococcus pneumoniae R6], gi\|15458441... gi\|182629217, gi... - gi\|182683883\|ref\|YP_001835630.1\| hypothetical protein SPCG_0913 [Streptococcus pneumoniae CGSP14], g... gi\|111658122 - gi\|111658122\|ref\|ZP_01408820.1\| hypothetical protein SpneT_02000688 [Streptococcus pneumoniae TIGR4]	1.0E-58	[1..168]	[10..180]
gi\|19703961, gi\|... - gi\|19714139\|gb\|AAL94822.1\| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ...	2.0E-58	[1..168]	[11..181]
IRC4_YEAST - Uncharacterized protein IRC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC4 PE=1 S... IRC4 - Putative protein of unknown function; null mutant displays increased levels of spontaneous Rad52p fo... gi\|151942499 - gi\|151942499\|gb\|EDN60855.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190404545 - gi\|190404545\|gb\|EDV07812.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	2.0E-58	[1..179]	[1..179]
gi\|25373754, gi\|... - pir\|\|AG1748 hypothetical protein lin2532 [imported] - Listeria innocua (strain Clip11262), gi\|16415... gi\|16801594 - gi\|16801594\|ref\|NP_471862.1\| hypothetical protein lin2532 [Listeria innocua Clip11262]	1.0E-53	[1..166]	[1..165]
gi\|224500119 - gi\|224500119\|ref\|ZP_03668468.1\| hypothetical protein LmonF1_10739 [Listeria monocytogenes Finland 19... gi\|224503416 - gi\|224503416\|ref\|ZP_03671723.1\| hypothetical protein LmonFR_13042 [Listeria monocytogenes FSL R2-561... gi\|126942496, gi... - gi\|254900424\|ref\|ZP_05260348.1\| hypothetical protein LmonJ_11437 [Listeria monocytogenes J0161], gi\|... gi\|153197256, gi... - gi\|254831139\|ref\|ZP_05235794.1\| hypothetical protein Lmon1_07253 [Listeria monocytogenes 10403S], gi... gi\|16804476 - gi\|16804476\|ref\|NP_465961.1\| hypothetical protein lmo2438 [Listeria monocytogenes EGD-e] gi\|254913337, gi... - gi\|254913337\|ref\|ZP_05263349.1\| hypothetical protein LmonJ2_11097 [Listeria monocytogenes J2818], gi... gi\|254828013, gi... - gi\|254828013\|ref\|ZP_05232700.1\| hypothetical protein LmonocytogeFSL_06105 [Listeria monocytogenes FS... gi\|16411926, gi\|... - pir\|\|AF1379 hypothetical protein lmo2438 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|133731930, gi... - gi\|254937718\|ref\|ZP_05269415.1\| hypothetical protein LmonF6_11347 [Listeria monocytogenes F6900], gi... gi\|47014802, gi\|... - gi\|47096825\|ref\|ZP_00234406.1\| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F685... gi\|255026380 - gi\|255026380\|ref\|ZP_05298366.1\| hypothetical protein LmonocytFSL_08640 [Listeria monocytogenes FSL J... gi\|255028777 - gi\|255028777\|ref\|ZP_05300728.1\| hypothetical protein LmonL_05551 [Listeria monocytogenes LO28]	4.0E-53	[1..166]	[1..165]
gi\|190905325, gi... - gi\|191174392\|ref\|ZP_03035896.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190905325\|... gi\|218692923, gi... - gi\|218692923\|ref\|YP_002406035.1\| hypothetical protein p1ECUMN_0142 [Escherichia coli UMN026], gi\|218... gi\|7339831 - gi\|7339831\|gb\|AAF60966.1\| unknown [Escherichia coli Nissle 1917] gi\|91206311, gi\|... - gi\|91206311\|ref\|YP_538665.1\| hypothetical protein UTI89_P066 [Escherichia coli UTI89], gi\|91075762\|g... gi\|7339831 - gi\|7339831\|gb\|AAF60966.1\|AF188737_1 unknown [Escherichia coli Nissle 1917] gi\|218372398, gi... - gi\|218703089\|ref\|YP_002410718.1\| hypothetical protein ECIAI39_4871 [Escherichia coli IAI39], gi\|2187...	9.0E-51	[1..166]	[1..165]
gi\|12724290, gi\|... - gi\|15673293\|ref\|NP_267467.1\| hypothetical protein L144693 [Lactococcus lactis subsp. lactis Il1403],... gi\|25373752 - pir\|\|G86788 hypothetical protein yneF [imported] - Lactococcus lactis subsp. lactis (strain IL1403)	2.0E-46	[1..166]	[1..174]

Back

Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREYTSKKEL KEEIEKKYEK YDAEFETISE SQKDEKVETV DRTPSENLSY QLGWVNLLLE  60
   61 WEAKEIAGYN VETPAPGYKW NNLGGLYQSF YKKYGIYSIK EQRAKLREAV NEVYKWISTL 120
  121 SDDELFQAGN RKWATTKAMW PVYKWIHINT VAPFTNFRGK IRKWKRLVPE EQRIKRRKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits