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View Structure Prediction Details

Protein: RPL37B
Organism: Saccharomyces cerevisiae
Length: 88 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL37B.

Description E-value Query
Range
Subject
Range
gi|72538603, gi|... - gi|72538603|gb|EAL32366.2| GA21535-PA [Drosophila pseudoobscura], gi|125983088|ref|XP_001355309.1| G...
169.0 [0..1] [87..288]
gi|74009722 - gi|74009722|ref|XP_850092.1| PREDICTED: similar to ribosomal protein L37 [Canis familiaris]
134.0 [0..1] [87..58]
gi|159127942 - gi|159127942|gb|EDP53057.1| 60S ribosomal protein L37 [Aspergillus fumigatus A1163]
gi|66852567, gi|... - gi|71000493|ref|XP_754930.1| 60S ribosomal protein L37 [Aspergillus fumigatus Af293], gi|66852567|gb...
128.0 [0..3] [87..69]
gi|91090071 - gi|91090071|ref|XP_969650.1| PREDICTED: similar to Probable 60S ribosomal protein L37-A [Tribolium c...
119.0 [0..2] [87..29]
FBpp0303429, RpL... - The gene Ribosomal protein L37a is referred to in FlyBase by the symbol Dmel\RpL37a (CG9091, FBgn003...
117.0 [0..1] [87..1]
gi|90305412, gi|... - gi|90305412|gb|EAS35043.1| hypothetical protein CIMG_00397 [Coccidioides immitis RS], gi|119192040|r...
gi|240106250 - gi|240106250|gb|EER24443.1| 60S ribosomal protein L37, putative [Coccidioides posadasii C735 delta S...
116.0 [0..1] [87..1]
gi|38047707, gi|... - gi|38048279|gb|AAR10042.1| similar to Drosophila melanogaster CG9091 [Drosophila yakuba], gi|3804770...
116.0 [0..1] [87..1]
gi|114189176, gi... - gi|115402507|ref|XP_001217330.1| 60S ribosomal protein L37 [Aspergillus terreus NIH2624], gi|1141891...
116.0 [0..23] [87..533]
gi|49532862 - gi|49532862|dbj|BAD26666.1| Ribosomal protein L37 [Plutella xylostella]
115.0 [0..1] [88..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGTPSFGK RHNKSHTLCN RCGRRSFHVQ KKTCSSCGYP SAKTRSHNWA AKAKRRHTTG  60
   61 TGRMRYLKHV SRRFKNGFQT GSAKATSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.045757
Match: 1s1iY
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle