YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PEX29
Organism: Saccharomyces cerevisiae
Length: 554 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX29.

Description E-value Query
Range
Subject
Range
gi|49529045, gi|... - gi|50294640|ref|XP_449731.1| hypothetical protein CAGL0M08866g [Candida glabrata CBS138], gi|4952904...
gi|49529045 - gi|49529045|emb|CAG62707.1| unnamed protein product [Candida glabrata]
564.0 [0..1] [530..1]
PEX28 - Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and di...
PEX28_YEAST - Peroxisomal membrane protein PEX28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX28...
551.0 [0..71] [429..152]
gi|49640447 - gi|49640447|emb|CAH02904.1| KLLA0A07128p [Kluyveromyces lactis]
gi|49640447, gi|... - gi|50302759|ref|XP_451316.1| unnamed protein product [Kluyveromyces lactis], gi|49640447|emb|CAH0290...
430.0 [0..71] [552..16]
gi|44983276 - gi|44983276|gb|AAS52458.1| AEL227Cp [Ashbya gossypii ATCC 10895]
gi|45190380, gi|... - gi|45190380|ref|NP_984634.1| AEL227Cp [Ashbya gossypii ATCC 10895], gi|44983276|gb|AAS52458.1| AEL22...
403.0 [0..51] [510..2]
gi|49655635, gi|... - gi|50422781|ref|XP_459967.1| hypothetical protein DEHA0E15785g [Debaryomyces hansenii CBS767], gi|49...
264.0 [0..1] [470..1]
gi|42545479, gi|... - gi|46137161|ref|XP_390272.1| hypothetical protein FG10096.1 [Gibberella zeae PH-1], gi|42545479|gb|E...
214.0 [0..34] [449..26]
gi|90305152, gi|... - gi|90305152|gb|EAS34783.1| hypothetical protein CIMG_00137 [Coccidioides immitis RS], gi|119191520|r...
210.0 [0..44] [449..18]

Back

Predicted Domain #1
Region A:
Residues: [1-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVTNFFWN DTYNAGTPTR STLKGKKVQN GIDGKSQAKK ESISSGSRTS DPTRGSLPSS  60
   61 SGQPTSGGGF PSTSNIQKMM ADTLVEKIIK MALPPSSKTA VDTIHHRMVA GKERPKLSVQ 120
  121 ITSRNFIQMN SRLGVPFMIM DELIKILNWT NPAYTVSIMF LYTLIILKPF QMLSSLPIFY 180
  181 LLFCVMVPQY LYIHKPNPTS YLDNNQTPAQ GPPLRRPEVP KPVPELSQEF VLNLTDLQNH 240
  241 MLLYVKFYDF TLLILQKFAF FTNEAISSFY FIVLLIIATL NFLYMDKFIK LIPMRPVLIL 300
  301 LGWGFFIASH PSNREYLLTK LNSEETRLKT LTISTNLESK ILQHLKLIEA REHRLVMIFE 360
  361 IQKYLPEYKE WRPVGFSDDD YSLFSSLRIY QRRIEENSVK SLEEIEPPKD WEWEANSHWV 420
  421 LDLDPKEWVE DEFIQYVEID SETKWVYDLN LDGQRGSYRR RMWTNSCVRK KLDSGISSNL 480
  481 GEEEVVNPLR EETYRQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [497-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVHGVTKGSM SGGLTHSSDD DRADEESING TIPNLNNIDA DASYPSIEEL TDTLNSTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.489 a.4.1 Homeodomain-like
View Download 0.489 a.4.1 Homeodomain-like
View Download 0.467 a.272.1 Description not found.
View Download 0.451 a.60.1 SAM/Pointed domain
View Download 0.451 a.60.1 SAM/Pointed domain
View Download 0.420 a.17.1 p8-MTCP1
View Download 0.420 a.8.5 Description not found.
View Download 0.341 a.60.1 SAM/Pointed domain
View Download 0.329 a.60.1 SAM/Pointed domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle