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View Structure Prediction Details

Protein: SNM1
Organism: Saccharomyces cerevisiae
Length: 198 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNM1.

Description E-value Query
Range
Subject
Range
RMRP_YEAST - Ribonuclease MRP protein subunit SNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SN...
SNM1 - Subunit of RNase MRP, which cleaves pre-rRNA and has a role in cell cycle-regulated degradation of d...
3.0E-98 [1..198] [1..198]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDQAEKYQ ERSLRQKYNL LHVLPTLNSR ALSGLYYKNF HNSVKRYQIM LPEQLKSGKF  60
   61 CSHCGCVYVP NFNASLQLTT NTEQGDSDEL GGESMEGPKK CIQVNCLNCE KSKLFEWKSE 120
  121 FVVPTFGQDV SPMINSTSSG KVSYAVKKPQ KSKTSTGKER SKKRKLNSLT NLLSKRNQEK 180
  181 KMEKKKSSSL SLESFMKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle