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View Structure Prediction Details

Protein: SNF1
Organism: Saccharomyces cerevisiae
Length: 633 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF1.

Description E-value Query
Range
Subject
Range
gi|207346229 - gi|207346229|gb|EDZ72787.1| YDR477Wp-like protein [Saccharomyces cerevisiae AWRI1631]
SNF1_YEAST - Carbon catabolite-derepressing protein kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
SNF1 - AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the...
gi|151942440 - gi|151942440|gb|EDN60796.1| serine/threonine protein kinase [Saccharomyces cerevisiae YJM789]
0.0 [1..633] [1..633]
SNF1_CANGA - Carbon catabolite-derepressing protein kinase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM ...
SNF1_CANGA - Carbon catabolite-derepressing protein kinase OS=Candida glabrata GN=SNF1 PE=3 SV=2
0.0 [18..633] [2..611]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [22..633] [2..602]
SNF1_CANAX - Carbon catabolite-derepressing protein kinase OS=Candida albicans GN=SNF1 PE=2 SV=2
0.0 [5..632] [2..619]
SNF1_CANTR - Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1
0.0 [3..632] [2..618]
CDPKH_ARATH - Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
0.0 [2..492] [25..519]
gi|5162882, gi|5... - gi|5162882|dbj|BAA81751.1| calcium-dependent protein kinase [Marchantia polymorpha], gi|5162878|dbj|...
0.0 [2..516] [20..548]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNNNTNTA PANANSSHHH HHHHHHHHHH GHGGSNSTLN NPKSSLADGA HIGNYQIVKT  60
   61 LGEGSFGKVK LAYHTTTGQK VALKIINKKV LAKSDMQGRI EREISYLRLL RHPHIIKLYD 120
  121 VIKSKDEIIM VIEYAGN

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [330-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDSKKDGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 525.373389
Match: 1a06__
Description: Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [138-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELFDYIVQRD KMSEQEARRF FQQIISAVEY CHRHKIVHRD LKPENLLLDE HLNVKIADFG  60
   61 LSNIMTDGNF LKTSCGSPNY AAPEVISGKL YAGPEVDVWS CGVILYVMLC RRLPFDDESI 120
  121 PVLFKNISNG VYTLPKFLSP GAAGLIKRML IVNPLNRISI HEIMQDDWFK VDLPEYLLPP 180
  181 DLKPHPEEEN EN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 525.373389
Match: 1a06__
Description: Calmodulin-dependent protein kinase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [338-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPDNDEIDDN LVNILSSTMG YEKDEIYESL ESSEDTPAFN EIRDAYMLIK ENKSLIKDMK  60
   61 ANKSVSDELD TFLSQSPPTF QQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.221849
Match: 1ahr__
Description: Calmodulin
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [421-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKSHQKSQVD HETAKQHARR MASAITQQRT YHQSPFMDQY KEEDSTVSIL PTSLPQIHRA  60
   61 NMLAQGSPAA SKISPLVTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.221849
Match: 1ahr__
Description: Calmodulin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [500-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKTRWHFGI RSRSYPLDVM GEIYIALKNL GAEWAKPSEE DLWTIKLRWK YDIGNKTNTN  60
   61 EKIPDLMKMV IQLFQIETNN YLVDFKFDGW ESSYGDDTTV SNISEDEMST FSAYPFLHLT 120
  121 TKLIMELAVN SQSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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