YRC Public Data Repository - Protein Structure Prediction

Protein:	MFA1
Organism:	Saccharomyces cerevisiae
Length:	36 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFA1.

Description	E-value	Query Range	Subject Range
gi\|24940426, gi\|... - gi\|24940428\|emb\|CAD56313.1\| a-pheromone [Saccharomyces paradoxus], gi\|24940426\|emb\|CAD56312.1\| a-phe...	61.0	[0..1]	[36..1]
MFA2_YEAST - Mating hormone A-factor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MFA2 PE=1 SV=1 MFA2 - Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest a... gi\|151944393 - gi\|151944393\|gb\|EDN62671.1\| a-factor mating pheromone precursor [Saccharomyces cerevisiae YJM789] gi\|190409130 - gi\|190409130\|gb\|EDV12395.1\| a-factor mating pheromone precursor [Saccharomyces cerevisiae RM11-1a]	60.0	[0..1]	[36..1]

Back

Predicted Domain #1

Region A:
Residues: [1-36]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPSTATAAP KEKTSSEKKD NYIIKGVFWD PACVIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.719	g.41.3	Zinc beta-ribbon
View	Download	0.641	g.41.3	Zinc beta-ribbon
View	Download	0.636	b.72.1	WW domain
View	Download	0.587	g.41.3	Zinc beta-ribbon
View	Download	0.534	g.3.11	EGF/Laminin
View	Download	0.402	b.34.7	DNA-binding domain of retroviral integrase
View	Download	0.310	b.34.2	SH3-domain
View	Download	0.289	b.34.2	SH3-domain
View	Download	0.279	b.34.2	SH3-domain
View	Download	0.220	b.34.2	SH3-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits