YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS18B, RPS18A
Organism:	Saccharomyces cerevisiae
Length:	146 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS18B, RPS18A.

Description	E-value	Query Range	Subject Range
gi\|190408214 - gi\|190408214\|gb\|EDV11479.1\| ribosomal protein S18A [Saccharomyces cerevisiae RM11-1a] gi\|151946135, gi... - gi\|151946135\|gb\|EDN64366.1\| ribosomal protein S18B [Saccharomyces cerevisiae YJM789], gi\|151942415\|g... RS18A_YEAST, RS1... - 40S ribosomal protein S18-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS18B PE=1 ... RPS18B, RPS18A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps18Ap and has similari...	8.0E-47	[1..146]	[1..146]
RS18_ICTPU - 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1	1.0E-44	[1..144]	[1..142]
RS18_SPOFR - 40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1 gi\|48958395 - gi\|48958395\|dbj\|BAD23920.1\| ribosomal protein S18 [Antheraea yamamai]	2.0E-44	[1..144]	[1..142]
RS18_BOVIN - 40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3 RPS18 - ribosomal protein S18 tr\|G1TPG3\|G1TPG3... - pep:novel scaffold:oryCun2:GL018705:1171162:1171620:-1 gene:ENSOCUG00000014699 transcript:ENSOCUT000... RS18_CANLF - 40S ribosomal protein S18 OS=Canis lupus familiaris GN=RPS18 PE=1 SV=3 gi\|197127178 - gi\|197127178\|gb\|ACH43676.1\| putative ribosomal protein S18 [Taeniopygia guttata] gi\|433447 - gi\|433447\|emb\|CAA40750.1\| ribosomal protein S18 [Rattus rattus] gi\|51980678 - gb\|AAH82172.1\| Unknown (protein for MGC:98572) [Xenopus laevis] gi\|114606875, gi... - gi\|55626404\|ref\|XP_518400.1\| PREDICTED: similar to ribosomal protein [Pan troglodytes], gi\|114606875... RS18_PIG - 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=1 SV=3 RS18_CAPHI - 40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1 ENSCJAT00000042575 - null gi\|149732112 - gi\|149732112\|ref\|XP_001497114.1\| PREDICTED: similar to ribosomal protein S18 [Equus caballus] RS18_MOUSE - 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3 RS18_RAT - 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3 CB373105-4-510-55 - null	2.0E-44	[1..144]	[1..142]
rps-18 - ribosomal protein S13 status:Confirmed UniProt:O18240 protein_id:CAB16517.1	3.0E-44	[1..144]	[1..142]
gi\|194881531, gi... - gi\|194881531\|ref\|XP_001974884.1\| ribosomal protein S18 [Drosophila erecta], gi\|190658071\|gb\|EDV55284... RpS18-PA, RpS18-PB - The gene Ribosomal protein S18 is referred to in FlyBase by the symbol Dmel\RpS18 (CG8900, FBgn00104... gi\|56201301, gi\|... - gi\|56201301\|dbj\|BAD72904.1\| RpS18 [Drosophila simulans], gi\|195585039\|ref\|XP_002082302.1\| ribosomal ... gi\|194126631, gi... - gi\|56201321\|dbj\|BAD72922.1\| RpS18 [Drosophila sechellia], gi\|195336052\|ref\|XP_002034661.1\| ribosomal... gi\|194177814, gi... - gi\|38048391\|gb\|AAR10098.1\| similar to Drosophila melanogaster RpS18 [Drosophila yakuba], gi\|38047723...	5.0E-44	[1..144]	[1..142]
RS18_ARATH - 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1	2.0E-43	[1..144]	[1..142]
RS18_ENTHI - 40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1	1.0E-41	[5..144]	[4..143]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVVQEQGS FQHILRLLNT NVDGNIKIVY ALTTIKGVGR RYSNLVCKKA DVDLHKRAGE  60
   61 LTQEELERIV QIMQNPTHYK IPAWFLNRQN DITDGKDYHT LANNVESKLR DDLERLKKIR 120
  121 AHRGIRHFWG LRVRGQHTKT TGRRRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	684.134302
Match:	1k5xM_
Description:	No description for 1k5xM_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits