Protein: | SSN2 |
Organism: | Saccharomyces cerevisiae |
Length: | 1420 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSN2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1420] | [1..1420] |
|
0.002 | [398..680] | [3925..4194] |
Region A: Residues: [1-1420] |
1 11 21 31 41 51 | | | | | | 1 MSSDASTYRL EDVLSSFYRV EKIKKINYHQ YISKAQNDQW SIQMEFMLRK QDPKTLVALL 60 61 SRDLWCFSIN DDPVPTPPAI EHKPVSPDKI GTFTADYSKP NLPPHYALFL KALRRKIYIN 120 121 LALGSHNKLI QFGNACISLS GVPNYLVQLE PHLFVNGDLT VSLCAKNMGL VPMKEENLEE 180 181 SFLSKHALYL APSGIRMHLA PASKQGYLIT PPKHTELLLT TLSVSHGINL QNKKNLKWVA 240 241 VVPDLGHLNG HTPTIASYLT PLLEAKKLVW PLHLIFAQPV ADIENSTSGD PSEFHCLQDA 300 301 LDAIDDFIQL KQTAAYRTPG SSGVLSSNIA GTNPLSSDGA YTEQFQHYKN NSISSQPASY 360 361 HSVQETNKIS PKDFSPNFTG IDKLMLSPSD QFAPAFLNTP NNNINENELF NDRKQTTVSN 420 421 DLENSPLKTE LEANGRSLEK VNNSVSKTGS VDTLHNKEGT LEQREQNENL PSDKSDSMVD 480 481 KELFGEDEDE DLFGDSNKSN STNESNKSIS DEITEDMFEM SDEEENNNNK SINKNNKEMH 540 541 TDLGKDIPFF PSSEKPNIRT MSGTTKRLNG KRKYLDIPID EMTLPTSPLY MDPGAPLPVE 600 601 TPRDRRKSVF APLNFNPIIE NNVDNKYKSG GKFSFSPLQK EEALNFDISM ADLSSSEEEE 660 661 DEEENGSSDE DLKSLNVRDD MKPSDNISTN TNIHEPQYIN YSSIPSLQDS IIKQENFNSV 720 721 NDANITSNKE GFNSIWKIPQ NDIPQTESPL KTVDSSIQPI ESNIKMTLED NNVTSNPSEF 780 781 TPNMVNSEIS NLPKDKSGIP EFTPADPNLS FESSSSLPFL LRHMPLASIP DIFITPTPVV 840 841 TISEKEQDIL DLIAEQVVTD YNILGNLGIP KIAYRGVKDC QEGLITTTML QLFSTFDRLN 900 901 GNDTISKFYN MKQPYVFVKK HHELIKVKHD SQPFIKFLNF RPPNGIKNFK SLLLSSSFKE 960 961 DCLSFAPTLS QTYINQELGF CELLKLTNED PPGLMYLKAF DKNKLLLLAA QIVSYCSNNK1020 1021 NSIKNVPPIL IILPLDNATL TELVDKANIF QVIKNEVCAK MPNIELYLKV IPMDFIRNVL1080 1081 VTVDQYVNVA ISIYNMLPPK SVKFTHIAHT LPEKVNFRTM QQQQMQQQQQ QQQQQQNNST1140 1141 GSSSIIYYDS YIHLAYSRSV DKEWVFAALS DSYGQGSMTK TWYVGNSRGK FDDACNQIWN1200 1201 IALNLASKKF GKICLILTRL NGILPDDELM NWRRLSGRNI HLAVVCVDDN SKISFIDEDK1260 1261 LYPSFKPIYK DTRFGGRMDM TRLYDYEIRD IDQDIHGIVF QHPFPLAHSQ HRCAIRSGAL1320 1321 IKFKKCDGDT VWDKFAVNLL NCPHSDSTQL LETILEEFRN LAALNVWYGL SDGEDGHIPW1380 1381 HILAVKKMMN TLVHTRVKIA NTSAATVHTA TSSSIILSDK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [279-681] |
1 11 21 31 41 51 | | | | | | 1 PVADIENSTS GDPSEFHCLQ DALDAIDDFI QLKQTAAYRT PGSSGVLSSN IAGTNPLSSD 60 61 GAYTEQFQHY KNNSISSQPA SYHSVQETNK ISPKDFSPNF TGIDKLMLSP SDQFAPAFLN 120 121 TPNNNINENE LFNDRKQTTV SNDLENSPLK TELEANGRSL EKVNNSVSKT GSVDTLHNKE 180 181 GTLEQREQNE NLPSDKSDSM VDKELFGEDE DEDLFGDSNK SNSTNESNKS ISDEITEDMF 240 241 EMSDEEENNN NKSINKNNKE MHTDLGKDIP FFPSSEKPNI RTMSGTTKRL NGKRKYLDIP 300 301 IDEMTLPTSP LYMDPGAPLP VETPRDRRKS VFAPLNFNPI IENNVDNKYK SGGKFSFSPL 360 361 QKEEALNFDI SMADLSSSEE EEDEEENGSS DEDLKSLNVR DDM |
Detection Method: | |
Confidence: | 1.01 |
Match: | 1dv4A |
Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [682-791] |
1 11 21 31 41 51 | | | | | | 1 KPSDNISTNT NIHEPQYINY SSIPSLQDSI IKQENFNSVN DANITSNKEG FNSIWKIPQN 60 61 DIPQTESPLK TVDSSIQPIE SNIKMTLEDN NVTSNPSEFT PNMVNSEISN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [792-1026] |
1 11 21 31 41 51 | | | | | | 1 LPKDKSGIPE FTPADPNLSF ESSSSLPFLL RHMPLASIPD IFITPTPVVT ISEKEQDILD 60 61 LIAEQVVTDY NILGNLGIPK IAYRGVKDCQ EGLITTTMLQ LFSTFDRLNG NDTISKFYNM 120 121 KQPYVFVKKH HELIKVKHDS QPFIKFLNFR PPNGIKNFKS LLLSSSFKED CLSFAPTLSQ 180 181 TYINQELGFC ELLKLTNEDP PGLMYLKAFD KNKLLLLAAQ IVSYCSNNKN SIKNV |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1027-1249] |
1 11 21 31 41 51 | | | | | | 1 PPILIILPLD NATLTELVDK ANIFQVIKNE VCAKMPNIEL YLKVIPMDFI RNVLVTVDQY 60 61 VNVAISIYNM LPPKSVKFTH IAHTLPEKVN FRTMQQQQMQ QQQQQQQQQQ NNSTGSSSII 120 121 YYDSYIHLAY SRSVDKEWVF AALSDSYGQG SMTKTWYVGN SRGKFDDACN QIWNIALNLA 180 181 SKKFGKICLI LTRLNGILPD DELMNWRRLS GRNIHLAVVC VDD |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1250-1420] |
1 11 21 31 41 51 | | | | | | 1 NSKISFIDED KLYPSFKPIY KDTRFGGRMD MTRLYDYEIR DIDQDIHGIV FQHPFPLAHS 60 61 QHRCAIRSGA LIKFKKCDGD TVWDKFAVNL LNCPHSDSTQ LLETILEEFR NLAALNVWYG 120 121 LSDGEDGHIP WHILAVKKMM NTLVHTRVKI ANTSAATVHT ATSSSIILSD K |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.