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View Structure Prediction Details

Protein: SSN2
Organism: Saccharomyces cerevisiae
Length: 1420 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSN2.

Description E-value Query
Range
Subject
Range
gi|495490 - gi|495490|gb|AAA18614.1| Sca1p
0.0 [1..1420] [1..1420]
SPCC737.08 - midasin
MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1
0.002 [398..680] [3925..4194]

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Predicted Domain #1
Region A:
Residues: [1-1420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDASTYRL EDVLSSFYRV EKIKKINYHQ YISKAQNDQW SIQMEFMLRK QDPKTLVALL  60
   61 SRDLWCFSIN DDPVPTPPAI EHKPVSPDKI GTFTADYSKP NLPPHYALFL KALRRKIYIN 120
  121 LALGSHNKLI QFGNACISLS GVPNYLVQLE PHLFVNGDLT VSLCAKNMGL VPMKEENLEE 180
  181 SFLSKHALYL APSGIRMHLA PASKQGYLIT PPKHTELLLT TLSVSHGINL QNKKNLKWVA 240
  241 VVPDLGHLNG HTPTIASYLT PLLEAKKLVW PLHLIFAQPV ADIENSTSGD PSEFHCLQDA 300
  301 LDAIDDFIQL KQTAAYRTPG SSGVLSSNIA GTNPLSSDGA YTEQFQHYKN NSISSQPASY 360
  361 HSVQETNKIS PKDFSPNFTG IDKLMLSPSD QFAPAFLNTP NNNINENELF NDRKQTTVSN 420
  421 DLENSPLKTE LEANGRSLEK VNNSVSKTGS VDTLHNKEGT LEQREQNENL PSDKSDSMVD 480
  481 KELFGEDEDE DLFGDSNKSN STNESNKSIS DEITEDMFEM SDEEENNNNK SINKNNKEMH 540
  541 TDLGKDIPFF PSSEKPNIRT MSGTTKRLNG KRKYLDIPID EMTLPTSPLY MDPGAPLPVE 600
  601 TPRDRRKSVF APLNFNPIIE NNVDNKYKSG GKFSFSPLQK EEALNFDISM ADLSSSEEEE 660
  661 DEEENGSSDE DLKSLNVRDD MKPSDNISTN TNIHEPQYIN YSSIPSLQDS IIKQENFNSV 720
  721 NDANITSNKE GFNSIWKIPQ NDIPQTESPL KTVDSSIQPI ESNIKMTLED NNVTSNPSEF 780
  781 TPNMVNSEIS NLPKDKSGIP EFTPADPNLS FESSSSLPFL LRHMPLASIP DIFITPTPVV 840
  841 TISEKEQDIL DLIAEQVVTD YNILGNLGIP KIAYRGVKDC QEGLITTTML QLFSTFDRLN 900
  901 GNDTISKFYN MKQPYVFVKK HHELIKVKHD SQPFIKFLNF RPPNGIKNFK SLLLSSSFKE 960
  961 DCLSFAPTLS QTYINQELGF CELLKLTNED PPGLMYLKAF DKNKLLLLAA QIVSYCSNNK1020
 1021 NSIKNVPPIL IILPLDNATL TELVDKANIF QVIKNEVCAK MPNIELYLKV IPMDFIRNVL1080
 1081 VTVDQYVNVA ISIYNMLPPK SVKFTHIAHT LPEKVNFRTM QQQQMQQQQQ QQQQQQNNST1140
 1141 GSSSIIYYDS YIHLAYSRSV DKEWVFAALS DSYGQGSMTK TWYVGNSRGK FDDACNQIWN1200
 1201 IALNLASKKF GKICLILTRL NGILPDDELM NWRRLSGRNI HLAVVCVDDN SKISFIDEDK1260
 1261 LYPSFKPIYK DTRFGGRMDM TRLYDYEIRD IDQDIHGIVF QHPFPLAHSQ HRCAIRSGAL1320
 1321 IKFKKCDGDT VWDKFAVNLL NCPHSDSTQL LETILEEFRN LAALNVWYGL SDGEDGHIPW1380
 1381 HILAVKKMMN TLVHTRVKIA NTSAATVHTA TSSSIILSDK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [279-681]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVADIENSTS GDPSEFHCLQ DALDAIDDFI QLKQTAAYRT PGSSGVLSSN IAGTNPLSSD  60
   61 GAYTEQFQHY KNNSISSQPA SYHSVQETNK ISPKDFSPNF TGIDKLMLSP SDQFAPAFLN 120
  121 TPNNNINENE LFNDRKQTTV SNDLENSPLK TELEANGRSL EKVNNSVSKT GSVDTLHNKE 180
  181 GTLEQREQNE NLPSDKSDSM VDKELFGEDE DEDLFGDSNK SNSTNESNKS ISDEITEDMF 240
  241 EMSDEEENNN NKSINKNNKE MHTDLGKDIP FFPSSEKPNI RTMSGTTKRL NGKRKYLDIP 300
  301 IDEMTLPTSP LYMDPGAPLP VETPRDRRKS VFAPLNFNPI IENNVDNKYK SGGKFSFSPL 360
  361 QKEEALNFDI SMADLSSSEE EEDEEENGSS DEDLKSLNVR DDM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1dv4A
Description: 30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [682-791]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPSDNISTNT NIHEPQYINY SSIPSLQDSI IKQENFNSVN DANITSNKEG FNSIWKIPQN  60
   61 DIPQTESPLK TVDSSIQPIE SNIKMTLEDN NVTSNPSEFT PNMVNSEISN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [792-1026]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKDKSGIPE FTPADPNLSF ESSSSLPFLL RHMPLASIPD IFITPTPVVT ISEKEQDILD  60
   61 LIAEQVVTDY NILGNLGIPK IAYRGVKDCQ EGLITTTMLQ LFSTFDRLNG NDTISKFYNM 120
  121 KQPYVFVKKH HELIKVKHDS QPFIKFLNFR PPNGIKNFKS LLLSSSFKED CLSFAPTLSQ 180
  181 TYINQELGFC ELLKLTNEDP PGLMYLKAFD KNKLLLLAAQ IVSYCSNNKN SIKNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1027-1249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPILIILPLD NATLTELVDK ANIFQVIKNE VCAKMPNIEL YLKVIPMDFI RNVLVTVDQY  60
   61 VNVAISIYNM LPPKSVKFTH IAHTLPEKVN FRTMQQQQMQ QQQQQQQQQQ NNSTGSSSII 120
  121 YYDSYIHLAY SRSVDKEWVF AALSDSYGQG SMTKTWYVGN SRGKFDDACN QIWNIALNLA 180
  181 SKKFGKICLI LTRLNGILPD DELMNWRRLS GRNIHLAVVC VDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1250-1420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKISFIDED KLYPSFKPIY KDTRFGGRMD MTRLYDYEIR DIDQDIHGIV FQHPFPLAHS  60
   61 QHRCAIRSGA LIKFKKCDGD TVWDKFAVNL LNCPHSDSTQ LLETILEEFR NLAALNVWYG 120
  121 LSDGEDGHIP WHILAVKKMM NTLVHTRVKI ANTSAATVHT ATSSSIILSD K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle