YRC Public Data Repository - Protein Structure Prediction

Protein:	GPI17
Organism:	Saccharomyces cerevisiae
Length:	534 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPI17.

Description	E-value	Query Range	Subject Range
GPI17_YEAST - GPI transamidase component GPI17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI17 P... GPI17 - Transmembrane protein subunit of the glycosylphosphatidylinositol transamidase complex that adds GPI...	0.0	[1..534]	[1..534]
FBpp0308257 - type=protein; loc=3R:complement(20738990..20739303,20739549..20740166,20740228..20740422,20740915..2... gi\|220946894, gi... - gi\|220956470\|gb\|ACL90778.1\| CG31120-PB [synthetic construct], gi\|220946894\|gb\|ACL85990.1\| CG31120-PB...	0.0	[10..505]	[25..532]
PIGS_SCHPO - GPI transamidase component PIG-S homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=g... gpi17 - pig-S	0.0	[5..504]	[70..543]
PIGS - phosphatidylinositol glycan anchor biosynthesis, class S	0.0	[7..505]	[17..550]
gi\|22330899, gi\|... - gi\|22330899\|ref\|NP_187374.2\| GPI transamidase component PIG-S-related [Arabidopsis thaliana], gi\|221...	0.0	[6..505]	[28..588]
CE06453 - WBGene00011776 status:Partially_confirmed TR:Q22496 protein_id:CAA93093.1	0.0	[7..488]	[45..527]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNANLRKWV GFCFVAIYLF LGVPLWYKLT TVYRASLPIN YIESLQNNKF QDIHLVIPVY  60
   61 VKSDTYRFPD VHDAIQVQVN HLLNSQEQRV PWSLQVLPYN ETIEQMESEG NQFHVVTLKL 120
  121 DEFIGYSSAY DTKETLVYYD DAAVLSNDLP FFVAQTLVEH TFQLEWTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [169-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNKTCEGVST NNDVAISYDP NIHLSVTLLS GDGNPVAWEI EPTLTDYFSP FRKFLSPLVN  60
   61 FTVDSSIVYH NDLNLHSLNG SCTSVTWFDL SHTIDLSELS SMAYYPEDSA LNLAIVFPSA 120
  121 SSSPDGLAFI NGTRISDEIT TL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [311-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DWNSYLVPQW GVIIINKMPL KPNSVISEDY LEPMMYRFAT DIFQLLGLTE GSQDLLSPYI  60
   61 TIDSFKRLTI LQNLDKATET LWSLVKLTQQ FQGMSIPREV SDNVIEALDL RLQIIDLLND 120
  121 PGKGGDIVWN NALHLSNELV KLCEKAFFNG EMVQQNFFPQ EHMIAVYLPL LGPISAVMFF 180
  181 GFYNVMKEKN QKSKKNGTER EVAKEKLELK EAQKLHAIDG EDEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits