YRC Public Data Repository - Protein Structure Prediction

Protein:	DIT1
Organism:	Saccharomyces cerevisiae
Length:	536 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIT1.

Description	E-value	Query Range	Subject Range
DIT1_YEAST - Spore wall maturation protein DIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIT1 ... DIT1 - Sporulation-specific enzyme required for spore wall maturation, involved in the production of a solu...	0.0	[1..536]	[1..536]
gi\|227082079, gi... - gi\|227082079\|ref\|YP_002810630.1\| pvcA protein [Vibrio cholerae M66-2], gi\|227009967\|gb\|ACP06179.1\| p... gi\|229507958, gi... - gi\|229507958\|ref\|ZP_04397463.1\| PvcA protein related to known isonitrile synthases [Vibrio cholerae ... gi\|229343632, gi... - gi\|229518943\|ref\|ZP_04408386.1\| PvcA protein related to known isonitrile synthases [Vibrio cholerae ... gi\|75827265, gi\|... - gi\|75827265\|ref\|ZP_00756700.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Vibrio cholerae ... gi\|229607503, gi... - gi\|229607503\|ref\|YP_002878151.1\| PvcA protein-like known isonitrile synthase [Vibrio cholerae MJ-123... gi\|121727846, gi... - gi\|121727846\|ref\|ZP_01680913.1\| pvcA protein [Vibrio cholerae V52], gi\|121629882\|gb\|EAX62296.1\| pvcA... gi\|125618787, gi... - gi\|254849035\|ref\|ZP_05238385.1\| pyoverdine chromophore biosynthetic protein PvcA [Vibrio cholerae MO... gi\|126510697, gi... - gi\|153818734\|ref\|ZP_01971401.1\| pvcA protein [Vibrio cholerae NCTC 8457], gi\|126510697\|gb\|EAZ73291.1... gi\|153822511, gi... - gi\|229511806\|ref\|ZP_04401285.1\| PvcA protein related to known isonitrile synthases [Vibrio cholerae ... gi\|15641951, gi\|... - gi\|9656487\|gb\|AAF95097.1\| pvcA protein [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15641951\|r... gi\|11356049 - pir\|\|G82137 pvcA protein VC1949 [imported] - Vibrio cholerae (strain N16961 serogroup O1)	4.0E-98	[183..487]	[18..275]
gi\|11352441 - pir\|\|H83363 pyoverdine biosynthesis protein PvcA PA2254 [imported] - Pseudomonas aeruginosa (strain ... gi\|15597450, gi\|... - gi\|9948281\|gb\|AAG05642.1\|AE004651_4 pyoverdine biosynthesis protein PvcA [Pseudomonas aeruginosa PAO...	5.0E-96	[203..506]	[47..300]
gi\|3212172 - gi\|3212172\|gb\|AAC21671.1\| PvcA [Pseudomonas aeruginosa] gi\|3212172\|gb\|AA... - PvcA [Pseudomonas aeruginosa]	3.0E-94	[203..506]	[47..299]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFTSNLPSS SEQSISPPAS SFSSSTDTLK DIDIPHNGAD LSTYSKFLAL YCRSDKCDDF  60
   61 YSLEEKQNCK FGDQWLDFIN TIHNLDFSES EVSGRVSERI LPASLANKFT NNLGVAIKIS 120
  121 EYTRDDERQI RGCVTTVENE NSFNNWFVYH ILDQSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLSEHPIVT KEVKYHELFA DFFEKNLKNT IVNDQWNFGG RDYFIERSRY FTDRYLRIEC  60
   61 ILPAFPCKSS NEQKVYGSVP DKGEELALKR LIKATQDLVK IYPPGMKIWI VSDGHVFSDC 120
  121 IGVDDDVVST YTTKLHELYK RVAIPGVDAI GFCGLNDLFF SGAASKVFDP KWVSDVEVAH 180
  181 YTGTQICPKS DLSRQILMKG CDTDAGRLRK QIAIEGHPRL HLYRGFSRFM MEDLSLLEHF 240
  241 QSYSRKKFKK IISMIAFNMI KRNDAYSNLV ELIFPHHLRI SIHAHTNSGP KFGIKVISNE 300
  301 QCSIVSSLED LDEPKFEDFL HIPTPWHNCV VKVEDEKEKY FLTKSKVVKE ALEKGMYDGV 360
  361 WKDTRFDIGE GGHFVIKKIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits